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[185814_at]

Description C09G12.4 /REP_DB=WormBase Gene ID /WP=CE16838 /TR=O44458 /GB=AAC25813.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 90      4grp_total > 06      6grp_cgc > 96      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 18.7
(-1.3)
A 		6.1
(-3)
A 		40.7
(1.8)
A 		49.7
(3)
P 		44
B 34
(2.4)
A 		7.7
(-3)
A 		34.8
(2.5)
A 		37.1
(3)
A 		29
C 48.3
(2)
A 		27
(-0.3)
A 		1.4
(-3)
A 		57.6
(3)
A 		56
avr 33.7
(0.5) 		13.6
(-3) 		25.6
(-0.9) 		48.1
(3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 45.9
(3)
A 		11.1
(-2.3)
A 		14.9
(-1.7)
A 		17.1
(-1.4)
A 		42.8
(2.5)
A 		6.5
(-3)
A 		39
B 4.3
(-3)
A 		22.1
(-0.9)
A 		21.9
(-0.9)
A 		54.4
(3)
A 		31.6
(0.3)
A 		47.3
(2.1)
A 		50
C 23.7
(-0.4)
A 		27.1
(0)
A 		5.8
(-3)
A 		47.8
(3)
A 		17.5
(-1.3)
A 		23.8
(-0.4)
A 		42
avr 24.6
(-0.6) 		20.1
(-1.6) 		14.2
(-3) 		39.8
(3) 		30.6
(0.8) 		25.9
(-0.3) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 6.8
(0.5)
A 		1.3
(-3)
A 		10.6
(3)
A 		7.3
(0.9)
P 		9
B 10.8
(3)
A 		1.9
(-3)
A 		8.1
(1.2)
A 		7.9
(1)
A 		9
C 16
(3)
A 		7.8
(-0.2)
A 		0.5
(-3)
A 		9.7
(0.6)
A 		16
avr 11.2
(3) 		3.7
(-3) 		6.4
(-0.8) 		8.3
(0.7) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 8.5
(0.7)
A 		3.9
(-1.8)
A 		3.2
(-2.2)
A 		4.3
(-1.6)
A 		12.9
(3)
A 		1.6
(-3)
A 		11
B 1.5
(-3)
A 		7.3
(-0.8)
A 		5.3
(-1.6)
A 		14.4
(1.8)
A 		12.8
(1.2)
A 		17.6
(3)
A 		16
C 8.8
(2.4)
A 		8.3
(2)
A 		1.5
(-3)
A 		9.6
(3)
A 		5.7
(0.1)
A 		8
(1.8)
A 		8
avr 6.3
(-0.5) 		6.5
(-0.3) 		3.3
(-3) 		9.4
(2.1) 		10.5
(3) 		9.1
(1.8) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185814_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10931
Sequence Type Exemplar sequence
Representative Public ID C09G12.4 NCBI
Target Description C09G12.4 /REP_DB=WormBase Gene ID /WP=CE16838 /TR=O44458 /GB=AAC25813.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000001991 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:3479341:3490181:1 11/11 None
C09G12.4 ENSEMBL cdna:pseudogene chromosome:CEL140:IV:3487630:3489086:1 gene:C09G12.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3486732-3489092(+) 100.0 100.0
Public Domain and Genome References
Ensembl C09G12.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast B88650 protein C09G12.4 [imported] - Caenorhabditis elegans 1.0E-176
blast AAT92088 Serpentine receptor, class z protein 82 [Caenorhabditis elegans] ref|NP_001021315.1| Serpentine Receptor, class Z family member (srz-82) [Caenorhabditis elegans] 7.0E-84
blast AAC25815 Serpentine receptor, class z protein 79 [Caenorhabditis elegans] ref|NP_500359.1| Serpentine Receptor, class Z family member (srz-79) [Caenorhabditis elegans] 3.0E-68
Protein Domains
Database ID Description E-Value
Pfam IPR003845 EMBL-EBI Protein of unknown function DUF216 3.0E-10
Pfam IPR003845 EMBL-EBI Protein of unknown function DUF216 4.5E-6
Pfam IPR003845 EMBL-EBI Protein of unknown function DUF216 3.1E-41
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000001991 12 101-123,160-182,195-217,237-270,291-313,323-345,382-404,408-430,460-482,497-519,540-562,572-594
Sequence
Target Sequence 
>C. ELEGANS:185814_AT
cactttctaacattcctactggctgcccaacgctgtctaattttcttttttccaagttct
gagaagcatgtggttttgtttcaaaaacgtttgttcaagtatatctggcaggtgtattct
ttctgcttcgttaaagagatcgtgcttcttctaattttctgctcaaaccgtaaaaaccat
cctattaattttgaaatgtattctctggtagttattgcgttattctatgcgttattattt
ctttcaacagcattttatattccaattattttcaatgctcggagaatgttctcagctcaa
agctgtgcaatgcaaaagtacatttatacacagaccctaacagtgtttatatgcaaatcg
atagccttatcaattttcatatacctaatcacttttggcacgtatccaccatctagttat
gctgttctcattgtagcaacagacattgtcacaactcctctaatag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACTTTCTAACATTCCTACTGGCTG 166 197 487 Antisense
CAGGTGTATTCTTTCTGCTTCGTTA 665 207 595 Antisense
GATCGTGCTTCTTCTAATTTTCTGC 102 419 624 Antisense
GTATTCTCTGGTAGTTATTGCGTTA 613 451 684 Antisense
ATTGCGTTATTCTATGCGTTATTAT 132 7 700 Antisense
GGAGAATGTTCTCAGCTCAAAGCTG 455 519 767 Antisense
GTACATTTATACACAGACCCTAACA 81 461 804 Antisense
ACCTAATCACTTTTGGCACGTATCC 129 87 869 Antisense
GCACGTATCCACCATCTAGTTATGC 388 315 884 Antisense
GTTATGCTGTTCTCATTGTAGCAAC 405 447 902 Antisense
GACATTGTCACAACTCCTCTAATAG 336 371 928 Antisense
Sequence Source Affymetrix Proprietary Database