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[185813_at]

Description F58E1.11 /REP_DB=WormBase Gene ID /WP=CE11392 /TR=Q9TZG1 /GB=AAC67488.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 75      4grp_total > 45      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 33
(-0.5)
A 		67.4
(3)
A 		7.6
(-3)
A 		47.8
(1)
A 		60
B 45.8
(3)
A 		34.4
(1.1)
A 		42.5
(2.4)
A 		9.9
(-3)
A 		36
C 53.2
(3)
A 		13.7
(-3)
A 		22.9
(-1.6)
A 		13.5
(-3)
A 		40
avr 44
(3) 		38.5
(1.4) 		24.3
(-2.8) 		23.7
(-3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 60.2
(3)
A 		10.7
(-2.9)
A 		9.5
(-3)
A 		12.9
(-2.6)
A 		9.6
(-3)
A 		46.2
(1.3)
A 		51
B 9.3
(-2.4)
A 		8.4
(-2.5)
A 		52
(3)
A 		18.4
(-1.3)
A 		4.8
(-3)
A 		52.1
(3)
A 		47
C 5.5
(-3)
A 		6.6
(-2.9)
A 		8.5
(-2.7)
A 		61.9
(3)
A 		44.8
(1.2)
A 		30.3
(-0.4)
A 		56
avr 25
(-0.1) 		8.6
(-3) 		23.3
(-0.4) 		31.1
(0.9) 		19.7
(-1.1) 		42.9
(3) 		34
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 12
(1.8)
A 		14.6
(3)
A 		2
(-3)
A 		7
(-0.6)
A 		13
B 14.6
(3)
A 		8.5
(0.1)
A 		9.8
(0.7)
A 		2.1
(-3)
A 		13
C 17.6
(3)
A 		3.9
(-2.4)
A 		8
(-0.8)
A 		2.3
(-3)
A 		15
avr 14.7
(3) 		9
(-0.1) 		6.6
(-1.5) 		3.8
(-3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 11.1
(2.9)
A 		3.8
(-1.9)
A 		2.1
(-3)
A 		3.3
(-2.2)
A 		2.9
(-2.5)
A 		11.2
(3)
A 		9
B 3.2
(-2.6)
A 		2.8
(-2.7)
A 		12.6
(0.7)
A 		4.9
(-2)
A 		2
(-3)
A 		19.4
(3)
A 		17
C 2
(-3)
A 		2
(-3)
A 		2.2
(-2.9)
A 		12.5
(2)
A 		14.5
(3)
A 		10.2
(0.9)
A 		13
avr 5.4
(-1.6) 		2.9
(-3) 		5.6
(-1.5) 		6.9
(-0.8) 		6.5
(-1) 		13.6
(3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185813_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5878
Sequence Type Exemplar sequence
Representative Public ID F58E1.11 NCBI
Target Description F58E1.11 /REP_DB=WormBase Gene ID /WP=CE11392 /TR=Q9TZG1 /GB=AAC67488.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061643(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061643 NCBI Caenorhabditis elegans F58E1.11 (F58E1.11) mRNA, complete cds. 11/11 None
SNAP00000040830 ENSEMBL cdna:SNAP chromosome:CEL140:II:1691560:1692908:-1 11/11 None
GENEFINDER00000040834 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1691560:1692908:-1 11/11 None
F58E1.11 ENSEMBL cdna:known chromosome:CEL140:II:1691560:1692908:-1 gene:F58E1.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1691558-1692893(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F58E1.11
Entrez Gene 186515 Entrez gene
SwissProt Q9TZG1 EMBL-EBI
WormBase CE36171 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16829 lyase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC67488 Hypothetical protein F58E1.11 [Caenorhabditis elegans] ref|NP_494044.2| F58E1.11 [Caenorhabditis elegans] 0.0
blast AAC67487 Hypothetical protein F58E1.10 [Caenorhabditis elegans] ref|NP_494043.1| F58E1.10 [Caenorhabditis elegans] 1.0E-174
blast AAB66237 Hypothetical protein R07C3.7 [Caenorhabditis elegans] ref|NP_493850.1| R07C3.7 [Caenorhabditis elegans] 2.0E-44
Sequence
Target Sequence 
>C. ELEGANS:185813_AT
gctcagttctacatccttgagaagctgtttgggggaagaagctgcatcaatgtcctcaca
ctgagtattgactccattggcattctccgtataccttccaacttgaatttgaagtttcaa
ggtttggactgctatgaatatgagcctgacaacattttgaaagcgcttcgtccgtttctt
acaccatcagtccttccactgaaaactttgcaaatctgttcagttccagaaatgccacac
ccaattgtcgaaagtgctgaggaactgacgcttataacaaaggacaggttgataacgctg
accaacttgaaagtcactgtcttgagctatgatatgaagtcagtagaagagcccgcggag
cttatcaaaaaatggttgagagacggaaaacagattggaactgtgttcacactctcaagc
tttaaagaaattaaatcaaaaatactgttagatgatgtgaagaggagattcaaggaaaaa
atcgttcgagtagaagaatcaaacggggatctcaccagtgtcaccctatcgatgaacgac
tctgcggagctagtgatccaacgcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTCAGTTCTACATCCTTGAGAAGC 565 301 610 Antisense
AAGAAGCTGCATCAATGTCCTCACA 233 153 645 Antisense
CATTTTGAAAGCGCTTCGTCCGTTT 215 215 762 Antisense
AGTCCTTCCACTGAAAACTTTGCAA 20 1 798 Antisense
ACTTTGCAAATCTGTTCAGTTCCAG 98 101 814 Antisense
AATGCCACACCCAATTGTCGAAAGT 407 167 840 Antisense
GTGCTGAGGAACTGACGCTTATAAC 449 473 863 Antisense
GGAACTGTGTTCACACTCTCAAGCT 329 529 1006 Antisense
TCAAACGGGGATCTCACCAGTGTCA 624 627 1108 Antisense
CCAGTGTCACCCTATCGATGAACGA 157 273 1124 Antisense
TCTGCGGAGCTAGTGATCCAACGCG 593 607 1150 Antisense
Sequence Source Affymetrix Proprietary Database