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[185809_at]

Description Y23B4A.2 /REP_DB=WormBase Gene ID /WP=CE21455 /TR=Q9N563 /GB=AAF60452.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 56      6grp_high1_10_10 > 64      4grp_highest_8_8 > 46      4grp_high_8_8 > 10      6grp_highest_nonorm > 91      6grp_total > 55      4grp_total > 22      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 212
1 2 3 4 range
A 293.3
(2.2)
P 		142.1
(-2.2)
P 		113.6
(-3)
P 		322.8
(3)
P 		209
B 310.1
(3)
P 		113.3
(-3)
P 		119.9
(-2.8)
P 		291
(2.4)
P 		197
C 251.7
(1.3)
P 		178.6
(-0.9)
P 		110.4
(-3)
P 		306.7
(3)
P 		196
avr 285
(2.3) 		144.7
(-2.1) 		114.6
(-3) 		306.8
(3) 		192

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 119
1 2 3 4 5 6 range
A 221.9
(3)
P 		126.8
(-3)
P 		214
(2.5)
P 		173.5
(-0.1)
P 		166.3
(-0.5)
P 		209.6
(2.2)
P 		95
B 161.3
(-3)
P 		244.1
(2.9)
P 		245.5
(3)
P 		178.8
(-1.8)
P 		177.2
(-1.9)
P 		206.1
(0.2)
P 		84
C 183.8
(-2.4)
P 		178
(-3)
P 		185.3
(-2.2)
P 		235.7
(3)
P 		179.6
(-2.8)
P 		230.1
(2.4)
P 		58
avr 189
(-0.9) 		183
(-1.7) 		214.9
(2.9) 		196
(0.2) 		174.4
(-3) 		215.3
(3) 		41
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 79
1 2 3 4 range
A 106.8
(3)
P 		30.8
(-2.9)
P 		29.7
(-3)
P 		47.3
(-1.6)
P 		77
B 98.9
(3)
P 		28
(-3)
P 		27.8
(-3)
P 		62
(-0.1)
P 		71
C 83.3
(3)
P 		51.3
(-1.3)
P 		38.5
(-3)
P 		51.7
(-1.2)
P 		45
avr 96.3
(3) 		36.7
(-2.6) 		32
(-3) 		53.7
(-1) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 40.9
(-3)
P 		45.1
(-0.5)
P 		46.6
(0.4)
P 		44
(-1.2)
P 		50.2
(2.5)
P 		51
(3)
P 		10
B 56.1
(-1.5)
P 		81.2
(3)
P 		59.6
(-0.8)
P 		47.4
(-3)
P 		72
(1.4)
P 		76.9
(2.2)
P 		34
C 68.1
(1.2)
P 		54.3
(-1.6)
P 		47.2
(-3)
P 		47.4
(-3)
P 		58.1
(-0.8)
P 		77
(3)
P 		30
avr 55
(-0.6) 		60.2
(0.8) 		51.1
(-1.7) 		46.3
(-3) 		60.1
(0.8) 		68.3
(3) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185809_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16023
Sequence Type Exemplar sequence
Representative Public ID Y23B4A.2 NCBI
Target Description Y23B4A.2 /REP_DB=WormBase Gene ID /WP=CE21455 /TR=Q9N563 /GB=AAF60452.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076590(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076590 NCBI Caenorhabditis elegans Y23B4A.2 (Y23B4A.2) mRNA, complete cds. 11/11 None
GENEFINDER00000011334 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:5919724:5920338:1 11/11 None
Y23B4A.2 ENSEMBL cdna:known chromosome:CEL140:X:5919652:5920455:1 gene:Y23B4A.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5919723-5920175(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y23B4A.2
Entrez Gene 189521 Entrez gene
SwissProt Q9N563 EMBL-EBI
WormBase CE21455 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60452 Hypothetical protein Y23B4A.2 [Caenorhabditis elegans] ref|NP_508991.1| Y23B4A.2 [Caenorhabditis elegans] 2.0E-42
blast CAE68821 Hypothetical protein CBG14780 [Caenorhabditis briggsae] 3.0E-29
blast AAF60452 Hypothetical protein Y23B4A.2 [Caenorhabditis elegans] ref|NP_508991.1| Y23B4A.2 [Caenorhabditis elegans] 3.0E-22
blast CAE68821 Hypothetical protein CBG14780 [Caenorhabditis briggsae] 5.0E-16
Sequence
Target Sequence 
>C. ELEGANS:185809_AT
actttgctcatttttagccttccagtgtcaacggctttagattataatgatttctccttg
caacgaattgctcgggctccacatccatcatctgctctcttagtgccatacccaagagtc
ggaaaacgaagtaacattttgaataacaattccgaatcacaaaactctgtccaaaagaga
ctctacatggcgcgtgttggaaaacgagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTTTGCTCATTTTTAGCCTTCCAG 99 101 34 Antisense
CATTTTTAGCCTTCCAGTGTCAACG 402 215 42 Antisense
CCTTCCAGTGTCAACGGCTTTAGAT 657 265 51 Antisense
GTGTCAACGGCTTTAGATTATAATG 133 487 58 Antisense
TTATAATGATTTCTCCTTGCAACGA 589 679 75 Antisense
CTTGCAACGAATTGCTCGGGCTCCA 309 219 90 Antisense
GCTCTCTTAGTGCCATACCCAAGAG 116 301 127 Antisense
GTGCCATACCCAAGAGTCGGAAAAC 672 473 136 Antisense
TCCGAATCACAAAACTCTGTCCAAA 477 595 184 Antisense
AAAGAGACTCTACATGGCGCGTGTT 343 123 207 Antisense
ACATGGCGCGTGTTGGAAAACGAGC 301 107 218 Antisense
Sequence Source Affymetrix Proprietary Database