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[185808_at]

Description H14E04.4 /REP_DB=WormBase Gene ID /WP=CE20969 /TR=Q9TYP3 /GB=AAD12811.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 17      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 104
1 2 3 4 range
A 5.4
(-3)
A 		16.8
(-2.3)
A 		53.5
(-0.2)
A 		108.3
(3)
A 		103
B 4.2
(-3)
A 		56.5
(3)
A 		10.7
(-2.3)
A 		21.5
(-1)
A 		52
C 8.6
(-2.6)
A 		13
(-2.1)
A 		5
(-3)
A 		59.4
(3)
A 		54
avr 6.1
(-3) 		28.8
(-0.6) 		23.1
(-1.2) 		63.1
(3) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 6.4
(1.8)
A 		5.4
(-0.1)
A 		6.4
(1.8)
A 		3.9
(-3)
A 		7
(3)
A 		5.3
(-0.3)
A 		3
B 18.6
(-0.3)
A 		13.5
(-1.2)
A 		35.9
(3)
A 		5.3
(-2.8)
A 		5.2
(-2.8)
A 		4
(-3)
A 		32
C 2.2
(-3)
A 		8
(-2)
A 		10.4
(-1.6)
A 		8.1
(-2)
A 		37.6
(3)
A 		4.7
(-2.6)
A 		35
avr 9.1
(-1) 		9
(-1) 		17.6
(3) 		5.8
(-2.5) 		16.6
(2.5) 		4.7
(-3) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 2
(-3)
A 		3.6
(-2.3)
A 		14
(2.2)
A 		15.8
(3)
A 		14
B 1.4
(-3)
A 		13.9
(3)
A 		2.5
(-2.5)
A 		4.6
(-1.5)
A 		13
C 2.9
(-2.2)
A 		3.7
(-1.6)
A 		1.8
(-3)
A 		10
(3)
A 		8
avr 2.1
(-3) 		7.1
(0.8) 		6.1
(-0) 		10.1
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 1.2
(-1.9)
A 		1.9
(1.9)
A 		1.4
(-0.8)
A 		1
(-3)
A 		2.1
(3)
A 		1.3
(-1.4)
A 		1
B 6.5
(1.2)
A 		4.5
(-0.5)
A 		8.7
(3)
A 		1.4
(-3)
A 		2.1
(-2.4)
A 		1.5
(-2.9)
A 		7
C 0.8
(-3)
A 		2.4
(-2.2)
A 		2.6
(-2.1)
A 		1.6
(-2.6)
A 		12.2
(3)
A 		1.6
(-2.6)
A 		11
avr 2.8
(-0.9) 		2.9
(-0.7) 		4.2
(1.1) 		1.3
(-3) 		5.5
(3) 		1.5
(-2.7) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185808_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8093
Sequence Type Exemplar sequence
Representative Public ID H14E04.4 NCBI
Target Description H14E04.4 /REP_DB=WormBase Gene ID /WP=CE20969 /TR=Q9TYP3 /GB=AAD12811.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065146(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065146 NCBI Caenorhabditis elegans H14E04.4 (H14E04.4) mRNA, complete cds. 11/11 None
H14E04.4 ENSEMBL cdna:known chromosome:CEL140:III:2390191:2392104:-1 gene:H14E04.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:2390328-2392104(-) 47.83 83.23
Public Domain and Genome References
Gene Title
Ensembl H14E04.4
Entrez Gene 186744 Entrez gene
SwissProt Q9TYP3 EMBL-EBI
WormBase CE20969 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAD12811 Hypothetical protein H14E04.4 [Caenorhabditis elegans] ref|NP_497547.1| H14E04.4 [Caenorhabditis elegans] 8.0E-75
Sequence
Target Sequence 
>C. ELEGANS:185808_AT
aatttttgacgaccgaaggctctggaatcagcaacaaaacactcccactggcatgtcgtt
ttctgctcattttcccatctaaacaaccagaaaaagtttcactttcccctcagggcacgg
agcttaagcgtctgctccaggttttgctcgaaacttttcaatttgccccgaaggaacttt
gtttttttttgaatttttcctgtaagaatacgtttttaagtacattgtgcagcaaaaata
agcaaaaaacctcaaaaactgcaaaagttatgaattttcaaaatttttcaaaaaagtttt
taaaaaatttgaaaaattttggagtctcgccacgaaaaaaagccggggtactgtacagtg
tgcacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTTTTGACGACCGAAGGCTCTGG 459 173 68 Antisense
GACCGAAGGCTCTGGAATCAGCAAC 563 381 78 Antisense
AATCAGCAACAAAACACTCCCACTG 120 171 93 Antisense
TGCTCATTTTCCCATCTAAACAACC 384 579 131 Antisense
CCCTCAGGGCACGGAGCTTAAGCGT 303 259 174 Antisense
GGAGCTTAAGCGTCTGCTCCAGGTT 171 521 186 Antisense
GCTCCAGGTTTTGCTCGAAACTTTT 85 299 201 Antisense
TCAATTTGCCCCGAAGGAACTTTGT 364 627 225 Antisense
TGAATTTTTCCTGTAAGAATACGTT 610 321 257 Antisense
TACGTTTTTAAGTACATTGTGCAGC 157 647 276 Antisense
GCCGGGGTACTGTACAGTGTGCACC 665 283 409 Antisense
Sequence Source Affymetrix Proprietary Database