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[185806_at]

Description T02H6.10 /REP_DB=WormBase Gene ID /WP=CE21146 /TR=Q9N5F1 /GB=AAF39959.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 82      4grp_total > 44      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 6.2
(-0.5)
A 		7.2
(3)
A 		5.5
(-3)
A 		6.6
(0.9)
A 		2
B 19.9
(3)
A 		19.1
(2.6)
A 		10.7
(-1.3)
A 		7.2
(-3)
A 		13
C 2.1
(-3)
A 		2.4
(-2.6)
A 		5.2
(0.8)
A 		7
(3)
A 		5
avr 9.4
(2.6) 		9.6
(3) 		7.1
(-2.6) 		6.9
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 3.7
(-2.6)
A 		13.8
(-0.1)
A 		2
(-3)
A 		19.5
(1.4)
A 		26.1
(3)
A 		6.4
(-1.9)
A 		24
B 5.8
(-2.5)
A 		38.8
(3)
A 		10.2
(-1.8)
A 		3.1
(-3)
A 		3.6
(-2.9)
A 		4.7
(-2.7)
A 		36
C 1.5
(-2.9)
A 		7.5
(-1.8)
A 		18.4
(0)
A 		35.7
(3)
A 		17.4
(-0.1)
A 		0.8
(-3)
A 		35
avr 3.7
(-3) 		20
(3) 		10.2
(-0.6) 		19.4
(2.8) 		15.7
(1.4) 		4
(-2.9) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 2.3
(3)
A 		1.6
(-0.2)
A 		1.4
(-1.2)
A 		1
(-3)
A 		1
B 6.3
(3)
A 		4.7
(1)
A 		2.5
(-1.8)
A 		1.5
(-3)
A 		5
C 0.7
(-3)
A 		0.7
(-3)
A 		1.8
(3)
A 		1.2
(-0.3)
A 		1
avr 3.1
(3) 		2.3
(0.5) 		1.9
(-0.8) 		1.2
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 0.7
(-2.8)
A 		4.9
(0.6)
A 		0.4
(-3)
A 		4.9
(0.6)
A 		7.9
(3)
A 		1.6
(-2)
A 		8
B 2
(-2.4)
A 		12.9
(3)
A 		2.5
(-2.2)
A 		0.8
(-3)
A 		1.5
(-2.7)
A 		1.8
(-2.5)
A 		12
C 0.5
(-2.8)
A 		2.3
(-1.3)
A 		4.7
(0.8)
A 		7.2
(3)
A 		5.6
(1.6)
A 		0.3
(-3)
A 		7
avr 1.1
(-3) 		6.7
(3) 		2.5
(-1.5) 		4.3
(0.4) 		5
(1.2) 		1.2
(-2.9) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185806_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5848
Sequence Type Exemplar sequence
Representative Public ID T02H6.10 NCBI
Target Description T02H6.10 /REP_DB=WormBase Gene ID /WP=CE21146 /TR=Q9N5F1 /GB=AAF39959.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061387(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061387 NCBI Caenorhabditis elegans T02H6.10 (T02H6.10) mRNA, complete cds. 11/11 None
T02H6.10 ENSEMBL cdna:known chromosome:CEL140:II:679783:680718:-1 gene:T02H6.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000003362 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:679782-680718(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T02H6.10
Entrez Gene 188009 Entrez gene
SwissProt Q9N5F1 EMBL-EBI
WormBase CE21146 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF39959 Hypothetical protein T02H6.10 [Caenorhabditis elegans] ref|NP_493788.1| T02H6.10 [Caenorhabditis elegans] 7.0E-62
Sequence
Target Sequence 
>C. ELEGANS:185806_AT
tcttcttatttttacccttgttgctaccttgcatgcccaatccggaagccctaagctcaa
ctgcaaagcctattggcttacacggtatattctggataacaacgccaacaaaacgaatac
tgacacatatcgcgtggaatgtggttacgaattgcataaacctttaagcgacggagagat
tcaatatcttcctgaaaaggttgccgctagcgtcataacttcaggtctccctgaacgtgt
tgataagggtcaattggtgggacttgtacaggatgcgatggttcctcatgagcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTTCTTATTTTTACCCTTGTTGCT 254 617 30 Antisense
CAATCCGGAAGCCCTAAGCTCAACT 221 167 67 Antisense
AGCTCAACTGCAAAGCCTATTGGCT 668 77 83 Antisense
GCCTATTGGCTTACACGGTATATTC 600 281 97 Antisense
AAACGAATACTGACACATATCGCGT 57 127 140 Antisense
GCGTGGAATGTGGTTACGAATTGCA 277 293 161 Antisense
TCCTGAAAAGGTTGCCGCTAGCGTC 111 585 219 Antisense
GCTAGCGTCATAACTTCAGGTCTCC 597 301 235 Antisense
AGGTCTCCCTGAACGTGTTGATAAG 393 57 252 Antisense
GGTGGGACTTGTACAGGATGCGATG 620 497 285 Antisense
GGATGCGATGGTTCCTCATGAGCAA 622 513 300 Antisense
Sequence Source Affymetrix Proprietary Database