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[185805_at]

Description T02B11.3 /REP_DB=WormBase Gene ID /WP=CE27394 /TR=O16972 /GB=AAB69907.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 30      4grp_total > 56      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 18.7
(-1.8)
A 		17.5
(-2)
A 		40.4
(3)
A 		13
(-3)
A 		27
B 21
(-0.2)
A 		34.1
(3)
A 		23.7
(0.5)
A 		9.2
(-3)
A 		25
C 18.1
(0.1)
A 		13.4
(-1)
A 		30.6
(3)
A 		4.6
(-3)
A 		26
avr 19.3
(-0.3) 		21.7
(0.4) 		31.6
(3) 		8.9
(-3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 36.3
(0.5)
A 		12
(-3)
A 		53.7
(3)
M 		33.6
(0.1)
A 		28.2
(-0.7)
A 		29.6
(-0.5)
A 		42
B 24.4
(-1.6)
A 		44.3
(3)
P 		18.9
(-2.8)
A 		39.4
(1.9)
A 		18.1
(-3)
A 		25.7
(-1.3)
A 		26
C 1.9
(-3)
A 		52.9
(3)
A 		36.3
(1)
A 		28.6
(0.1)
A 		12.4
(-1.8)
A 		12.9
(-1.7)
A 		51
avr 20.9
(-2.5) 		36.4
(3) 		36.3
(3) 		33.9
(2.1) 		19.6
(-3) 		22.7
(-1.9) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 6.8
(0.4)
A 		3.8
(-1.7)
A 		10.6
(3)
A 		1.9
(-3)
A 		9
B 6.7
(1.4)
A 		8.4
(3)
A 		5.5
(0.3)
A 		2
(-3)
A 		6
C 6
(0.2)
A 		3.8
(-1.2)
A 		10.7
(3)
A 		0.8
(-3)
A 		10
avr 6.5
(1) 		5.3
(0) 		8.9
(3) 		1.6
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 6.7
(-1.1)
A 		4.3
(-3)
A 		11.7
(3)
M 		8.5
(0.4)
A 		8.5
(0.4)
A 		7.2
(-0.6)
A 		7
B 8.5
(-0.7)
A 		14.7
(3)
P 		4.6
(-3)
A 		10.4
(0.4)
A 		7.3
(-1.4)
A 		9.6
(-0)
A 		10
C 0.7
(-3)
A 		16.1
(3)
A 		9.2
(0.3)
A 		5.8
(-1)
A 		4
(-1.7)
A 		4.3
(-1.6)
A 		15
avr 5.3
(-3) 		11.7
(3) 		8.5
(0) 		8.2
(-0.3) 		6.6
(-1.8) 		7
(-1.4) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185805_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15330
Sequence Type Exemplar sequence
Representative Public ID T02B11.3 NCBI
Target Description T02B11.3 /REP_DB=WormBase Gene ID /WP=CE27394 /TR=O16972 /GB=AAB69907.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_182369, NM_070945
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070945 NCBI Caenorhabditis elegans T02B11.3a (T02B11.3) mRNA, complete cds. A 
T02B11.3a ENSEMBL cdna:known chromosome:CEL140:V:864903:866659:-1 gene:T02B11.3 A 
T02B11.3b ENSEMBL cdna:known chromosome:CEL140:V:864930:866659:-1 gene:T02B11.3 None
NM_182369 NCBI Caenorhabditis elegans T02B11.3b (T02B11.3) mRNA, complete cds. None
GENEFINDER00000007477 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:863933:866656:-1 None
SNAP00000007464 ENSEMBL cdna:SNAP chromosome:CEL140:V:864996:866656:-1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000007463 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:863351-866656(-) 100.0 100.0
Public Domain and Genome References
Ensembl T02B11.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAO26005 Hypothetical protein T02B11.3a [Caenorhabditis elegans] ref|NP_503346.2| T02B11.3a [Caenorhabditis elegans] 1.0E-100
blast T32199 hypothetical protein T02B11.3 - Caenorhabditis elegans 2.0E-84
blast CAE62312 Hypothetical protein CBG06377 [Caenorhabditis briggsae] 2.0E-81
Sequence
Target Sequence 
>C. ELEGANS:185805_AT
cctgctacaacattattcctcaaacatttttttcttttagtttaaaagataactacgagc
caagtgccaagtatccacacagagaggcaaaaccacgtctggaaagggtatcaatgaaag
ttctccaaagagaggatggcatcaattatgttgctgcagttttcacctacaacagaatca
gcaggaatttatcgaaaaatgaaaacttccaatttggaaaggtttctgcacaaaaagatc
aagcacaagaagaaaatcgtctgttattcgttgggatccagaaacggccgcagccccatt
tgttcgatgcacttcacttgatttttgaatggactacaaaaggtgtttcgaaggtttttt
ccaatgggatgaaaattcggctgaaagtttcactcacagaaaaagctagcttggagaatg
cagtggattctgctactgttccgaagga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCTGCTACAACATTATTCCTCAAAC 259 267 527 Antisense
GAGCCAAGTGCCAAGTATCCACACA 285 385 583 Antisense
GAGAGGCAAAACCACGTCTGGAAAG 85 395 608 Antisense
AGGATGGCATCAATTATGTTGCTGC 288 57 659 Antisense
TATGTTGCTGCAGTTTTCACCTACA 42 657 673 Antisense
AATCGTCTGTTATTCGTTGGGATCC 216 169 781 Antisense
CGTTGGGATCCAGAAACGGCCGCAG 319 245 795 Antisense
ATTTGTTCGATGCACTTCACTTGAT 98 19 824 Antisense
TTCGGCTGAAAGTTTCACTCACAGA 57 695 902 Antisense
AAGCTAGCTTGGAGAATGCAGTGGA 128 151 929 Antisense
TGGATTCTGCTACTGTTCCGAAGGA 451 551 950 Antisense
Sequence Source Affymetrix Proprietary Database