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[185802_at]

Description F59E11.5 /REP_DB=WormBase Gene ID /WP=CE11504 /TR=O16761 /GB=AAG24141.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 45      6grp_high1_10_10 > 54      4grp_highest_8_8 > 06      4grp_high_8_8 > 30      6grp_highest_nonorm > 43      6grp_total > 54      4grp_total > 25      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2284
1 2 3 4 range
A 238.9
(-3)
P 		1518.3
(0.4)
P 		934
(-1.1)
P 		2468.3
(3)
P 		2229
B 246.8
(-3)
P 		1304.3
(0.1)
P 		1141.8
(-0.3)
P 		2270.7
(3)
P 		2024
C 283.2
(-3)
P 		1303.4
(-0.3)
P 		1090.2
(-0.8)
P 		2522.5
(3)
P 		2239
avr 256.3
(-3) 		1375.3
(0.1) 		1055.3
(-0.8) 		2420.5
(3) 		2164

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1138
1 2 3 4 5 6 range
A 724.2
(-2.3)
P 		996.6
(-0.8)
P 		1667.6
(3)
P 		1082.4
(-0.3)
P 		607.5
(-3)
P 		887.2
(-1.4)
P 		1060
B 764.1
(-3)
P 		1256.3
(0.8)
P 		1538.8
(3)
P 		944.8
(-1.6)
P 		807.4
(-2.7)
P 		1158.3
(0.1)
P 		775
C 529.3
(-3)
P 		1279.4
(2.2)
P 		1077.4
(0.8)
P 		1189.9
(1.6)
P 		556.3
(-2.8)
P 		1388.1
(3)
P 		859
avr 672.5
(-2.9) 		1177.4
(1.1) 		1427.9
(3) 		1072.4
(0.2) 		657.1
(-3) 		1144.5
(0.8) 		771
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 405
1 2 3 4 range
A 87
(-3)
P 		329.6
(2.3)
P 		244.2
(0.4)
P 		361.3
(3)
P 		274
B 78.7
(-3)
P 		322.1
(0.6)
P 		264.6
(-0.2)
P 		483.9
(3)
P 		405
C 93.7
(-3)
P 		374.7
(2.1)
P 		380
(2.2)
P 		425.3
(3)
P 		332
avr 86.5
(-3) 		342.1
(1.6) 		296.3
(0.7) 		423.5
(3) 		337

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 331
1 2 3 4 5 6 range
A 133.5
(-3)
P 		354.4
(2.8)
P 		363.2
(3)
P 		274.5
(0.7)
P 		183.3
(-1.7)
P 		216
(-0.8)
P 		230
B 265.9
(-2.5)
P 		418.2
(2.5)
P 		373.7
(1.1)
P 		250.2
(-3)
P 		328
(-0.4)
P 		431.9
(3)
P 		182
C 196.2
(-2.7)
P 		390.4
(1.4)
P 		274.2
(-1)
P 		239.3
(-1.8)
P 		180
(-3)
P 		464.7
(3)
P 		285
avr 198.5
(-3) 		387.7
(3) 		337
(1.4) 		254.7
(-1.2) 		230.4
(-2) 		370.9
(2.5) 		189
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185802_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11595
Sequence Type Exemplar sequence
Representative Public ID F59E11.5 NCBI
Target Description F59E11.5 /REP_DB=WormBase Gene ID /WP=CE11504 /TR=O16761 /GB=AAG24141.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072924(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072924 NCBI Caenorhabditis elegans F59E11.5 (F59E11.5) mRNA, complete cds. 11/11 None
SNAP00000037883 ENSEMBL cdna:SNAP chromosome:CEL140:V:8997688:8998779:1 11/11 None
GENEFINDER00000037888 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8997688:8998779:1 11/11 None
F59E11.5 ENSEMBL cdna:known chromosome:CEL140:V:8997687:8998928:1 gene:F59E11.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8997598-8998780(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F59E11.5
Entrez Gene 179278 Entrez gene
SwissProt O16761 EMBL-EBI
WormBase CE37776 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG24141 Hypothetical protein F59E11.5 [Caenorhabditis elegans] ref|NP_505325.2| F59E11.5 [Caenorhabditis elegans] 1.0E-124
blast CAE72063 Hypothetical protein CBG19149 [Caenorhabditis briggsae] 1.0E-108
blast CAB07669 Hypothetical protein T13F3.5 [Caenorhabditis elegans] ref|NP_507106.1| T13F3.5 [Caenorhabditis elegans] 5.0E-18
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505325.2 1 7-29
F59E11.5 1 7-29
SNAP00000037883 1 7-29
GENEFINDER00000037888 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:185802_AT
aacctttcatgttgtgcttgcattcttatcataattggttcaattgtggcaatttacatg
ttcggactgcaagctaaaatgccagatcctgggtactgtacgcggcagcatgcaacaatt
gcaatggaatgcgcaaagaaagacgacgaacttggtgcagctgccgctagtcttaatcac
acacaattcctccttcaaagaccggaacattatgaatctctgggtggactttgctttgtc
actctgcaatgtgcgcgagaaatcaagtgccgagcaatcagaaacattctaaatgacatc
agcatctgtggatttatctattactacacaaaagagttttcagagtgtgcagaaaaacta
tacgtaaagagaaatgaaattccatgcattggagaaatttataatgaaaacaagaggact
cctaaagaagcttgtcaaaagtggaagtcgatcaatccatgtgtgaaagaagccatccga
aatgaatgtgatgacaaacttggaatcctccagttcaaatgggagcagaaatcccacaaa
gccaacagtatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACCTTTCATGTTGTGCTTGCATTC 499 147 136 Antisense
ATTTACATGTTCGGACTGCAAGCTA 545 15 187 Antisense
TGCCAGATCCTGGGTACTGTACGCG 281 585 215 Antisense
GTACTGTACGCGGCAGCATGCAACA 248 459 228 Antisense
AGACGACGAACTTGGTGCAGCTGCC 680 69 276 Antisense
TGCCGCTAGTCTTAATCACACACAA 549 585 297 Antisense
CACAATTCCTCCTTCAAAGACCGGA 377 193 317 Antisense
TGAATCTCTGGGTGGACTTTGCTTT 301 569 348 Antisense
GCTTTGTCACTCTGCAATGTGCGCG 133 305 368 Antisense
ACAAACTTGGAATCCTCCAGTTCAA 551 111 629 Antisense
GAAATCCCACAAAGCCAACAGTATT 193 361 663 Antisense
Sequence Source Affymetrix Proprietary Database