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[185801_at]

Description C04E12.6 /REP_DB=WormBase Gene ID /WP=CE16819 /TR=O76674 /GB=AAC27092.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 44      4grp_total > 25      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 8.3
(-2.3)
A 		15.8
(-1.3)
A 		3.3
(-3)
A 		48.5
(3)
A 		45
B 3.4
(-3)
A 		11.7
(-1)
A 		27.8
(3)
A 		22.1
(1.6)
A 		24
C 10.1
(-3)
A 		38.8
(3)
A 		11.8
(-2.6)
A 		20.8
(-0.8)
A 		29
avr 7.3
(-3) 		22.1
(0.8) 		14.3
(-1.2) 		30.5
(3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 24.3
(2)
A 		0.8
(-3)
A 		29
(3)
P 		2
(-2.7)
A 		3.9
(-2.3)
A 		12.5
(-0.5)
A 		28
B 20.5
(3)
A 		12.2
(0.4)
A 		18.3
(2.3)
A 		1.1
(-3)
A 		13.1
(0.7)
A 		10.7
(-0)
A 		19
C 10.3
(1.3)
A 		5.3
(-1.3)
A 		1.8
(-3)
A 		4.5
(-1.7)
A 		7.2
(-0.3)
A 		13.8
(3)
A 		12
avr 18.4
(3) 		6.1
(-1.6) 		16.4
(2.2) 		2.5
(-3) 		8.1
(-0.9) 		12.3
(0.7) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 3
(-1)
A 		3.4
(-0.6)
A 		0.9
(-3)
A 		7.1
(3)
A 		6
B 1.1
(-3)
A 		2.9
(-1)
A 		6.5
(3)
A 		4.7
(1)
A 		5
C 3.3
(-3)
A 		11.2
(3)
A 		4.1
(-2.4)
A 		3.5
(-2.8)
A 		8
avr 2.5
(-3) 		5.8
(3) 		3.8
(-0.6) 		5.1
(1.7) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 4.5
(1.2)
A 		0.3
(-3)
A 		6.3
(3)
P 		0.5
(-2.8)
A 		1.2
(-2.1)
A 		3
(-0.3)
A 		6
B 7.1
(3)
A 		4.1
(0.4)
A 		4.4
(0.6)
A 		0.3
(-3)
A 		5.3
(1.4)
A 		4
(0.3)
A 		7
C 3.8
(1.9)
A 		1.6
(-1.3)
A 		0.4
(-3)
A 		0.9
(-2.3)
A 		2.3
(-0.3)
A 		4.6
(3)
A 		4
avr 5.1
(3) 		2
(-1.1) 		3.7
(1.1) 		0.6
(-3) 		2.9
(0.1) 		3.9
(1.4) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185801_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15954
Sequence Type Exemplar sequence
Representative Public ID C04E12.6 NCBI
Target Description C04E12.6 /REP_DB=WormBase Gene ID /WP=CE16819 /TR=O76674 /GB=AAC27092.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071532(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071532 NCBI Caenorhabditis elegans C04E12.6 (C04E12.6) mRNA, complete cds. 11/11 None
C04E12.6 ENSEMBL cdna:known chromosome:CEL140:V:3354495:3355339:-1 gene:C04E12.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000029745 7/11 Cross Hyb Matching Probes None
GENEFINDER00000029759 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3354494-3355339(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C04E12.6
Entrez Gene 182211 Entrez gene
SwissProt O76674 EMBL-EBI
WormBase CE16819 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC27092 Hypothetical protein C04E12.6 [Caenorhabditis elegans] ref|NP_503933.1| C04E12.6 [Caenorhabditis elegans] 1.0E-102
blast AAF99932 Hypothetical protein F35F10.7 [Caenorhabditis elegans] ref|NP_503909.1| F35F10.7 [Caenorhabditis elegans] 9.0E-80
blast AAF99933 Hypothetical protein F35F10.6 [Caenorhabditis elegans] ref|NP_503910.1| F35F10.6 [Caenorhabditis elegans] 2.0E-63
Protein Domains
Database ID Description E-Value
Pfam IPR010381 EMBL-EBI Caenorhabditis elegans protein of unknown function DUF976 4.5E-27
Pfam IPR010381 EMBL-EBI Caenorhabditis elegans protein of unknown function DUF976 9.7E-46
Sequence
Target Sequence 
>C. ELEGANS:185801_AT
gcgaaagatttatgattctctacgaaatttttactgtgtttgatgaaccagttgaagaag
aaaaaccaagttccgcagttattgtctacgaggaattgatcgtcagaactgcctttgccg
atgggtatactcaaaacgataaggatggaaatgttccagaagggaataaagtcaagttcg
atggagatgaaactgtcatgaaaaccgatgtcgactgtgagaagcttgtcaaggatctca
acgagttcatggaaaaagatagacagatgtatggggaattggaattccaaattattgaag
agtcagagagaaacctcgacggttatgcctatttcagttttctgaaatttgttcgttgcg
gaaacattcaccttcgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGAAAGATTTATGATTCTCTACGA 83 289 95 Antisense
TTCTCTACGAAATTTTTACTGTGTT 681 691 110 Antisense
GAAAAACCAAGTTCCGCAGTTATTG 284 355 154 Antisense
AAGTTCCGCAGTTATTGTCTACGAG 523 155 162 Antisense
TGCCTTTGCCGATGGGTATACTCAA 11 587 204 Antisense
GAAACTGTCATGAAAACCGATGTCG 591 357 283 Antisense
ACCGATGTCGACTGTGAGAAGCTTG 393 79 298 Antisense
GAGTCAGAGAGAAACCTCGACGGTT 706 397 394 Antisense
ACCTCGACGGTTATGCCTATTTCAG 191 87 407 Antisense
TTCTGAAATTTGTTCGTTGCGGAAA 310 693 434 Antisense
CGTTGCGGAAACATTCACCTTCGAA 600 245 448 Antisense
Sequence Source Affymetrix Proprietary Database