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[185800_at]

Description F55A12.6 /REP_DB=WormBase Gene ID /WP=CE11127 /TR=O01754 /GB=AAB54124.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 24      4grp_total > 45      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 56.5
(3)
A 		40.7
(-0)
A 		25.1
(-3)
A 		41.4
(0.1)
A 		31
B 50.8
(3)
A 		50.5
(2.9)
A 		26.5
(-1.2)
A 		16
(-3)
A 		35
C 49.4
(3)
A 		39
(1.6)
A 		16.9
(-1.2)
A 		3.2
(-3)
A 		46
avr 52.2
(3) 		43.4
(1.4) 		22.8
(-2.5) 		20.2
(-3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 90
1 2 3 4 5 6 range
A 85.8
(3)
A 		36.3
(-0.9)
A 		55.2
(0.6)
A 		9.5
(-3)
A 		31.1
(-1.3)
A 		34
(-1.1)
A 		76
B 64.3
(2.7)
A 		66.9
(3)
A 		42.9
(0.3)
A 		13
(-3)
A 		20.8
(-2.1)
A 		40.5
(0.1)
A 		54
C 41.1
(-0.8)
A 		56.4
(0.2)
A 		44.3
(-0.6)
A 		97.8
(3)
A 		7.6
(-3)
A 		16
(-2.4)
A 		90
avr 63.7
(3) 		53.2
(1.6) 		47.5
(0.8) 		40.1
(-0.2) 		19.8
(-3) 		30.2
(-1.6) 		44
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 20.6
(3)
A 		8.8
(-1.9)
A 		6.6
(-2.8)
A 		6.1
(-3)
A 		15
B 16.2
(3)
A 		12.5
(1.3)
A 		6.1
(-1.7)
A 		3.4
(-3)
A 		13
C 16.4
(3)
A 		11.2
(1)
A 		5.9
(-1)
A 		0.5
(-3)
A 		16
avr 17.7
(3) 		10.8
(0.1) 		6.2
(-1.8) 		3.3
(-3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 15.8
(3)
A 		12.9
(1.7)
A 		12
(1.3)
A 		2.4
(-3)
A 		9.4
(0.1)
A 		8.3
(-0.4)
A 		13
B 22.4
(3)
A 		22.3
(3)
A 		10.4
(-0.8)
A 		3.4
(-3)
A 		8.4
(-1.4)
A 		15.1
(0.7)
A 		19
C 15.2
(1.4)
A 		17.2
(2.1)
A 		11.3
(0.1)
A 		19.7
(3)
A 		2.5
(-3)
A 		5.4
(-2)
A 		17
avr 17.8
(3) 		17.5
(2.8) 		11.2
(-0.6) 		8.5
(-2.1) 		6.8
(-3) 		9.6
(-1.5) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185800_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1076
Sequence Type Exemplar sequence
Representative Public ID F55A12.6 NCBI
Target Description F55A12.6 /REP_DB=WormBase Gene ID /WP=CE11127 /TR=O01754 /GB=AAB54124.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059170(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059170 NCBI Caenorhabditis elegans F55A12.6 (F55A12.6) mRNA, complete cds. 10/11 None
GENEFINDER00000029059 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5338925:5341997:1 9/11 None
SNAP00000029038 ENSEMBL cdna:SNAP chromosome:CEL140:I:5339440:5341833:1 10/11 None
F55A12.6 ENSEMBL cdna:known chromosome:CEL140:I:5338925:5341980:1 gene:F55A12.6 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5338924-5341997(+) 84.41 100.0
Public Domain and Genome References
Gene Title
Ensembl F55A12.6
Entrez Gene 186280 Entrez gene
SwissProt O01754 EMBL-EBI
WormBase CE36649 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB54124 Hypothetical protein F55A12.6 [Caenorhabditis elegans] ref|NP_491571.2| F55A12.6 [Caenorhabditis elegans] 2.0E-85
blast AAB54124 Hypothetical protein F55A12.6 [Caenorhabditis elegans] ref|NP_491571.2| F55A12.6 [Caenorhabditis elegans] 2.0E-33
blast AAB54124 Hypothetical protein F55A12.6 [Caenorhabditis elegans] ref|NP_491571.2| F55A12.6 [Caenorhabditis elegans] 1.0E-27
blast CAE65423 Hypothetical protein CBG10381 [Caenorhabditis briggsae] 4.0E-15
blast CAE65423 Hypothetical protein CBG10381 [Caenorhabditis briggsae] 1.0E-14
blast AAB52349 Hypothetical protein F48C1.8 [Caenorhabditis elegans] ref|NP_491570.1| F48C1.8 [Caenorhabditis elegans] 2.0E-13
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491571.2 1 12-34
F55A12.6 1 12-34
GENEFINDER00000029059 1 12-30
Sequence
Target Sequence 
>C. ELEGANS:185800_AT
cccagagtttcccaagtcgagtaataagaaaccagggccttaagcccaatgtcagtcttt
tctcacaaaccaaaactctcaaggaattcttttttttttcagttgaatctgatgctcaac
gaggcggtggtcgtggtggcggcgggagccgaggtggtggtggtcgaggtggcggcggaa
gaggtggaggtggcggtcgcggtggcggaggccgcggaggcggctggggaggcgggcgag
gtggaggacgtggaggatggggtgaaggacgtggaagaggtggatggggaggtggaagag
gaggtagtggatggcataactcgcatagtcatgaaagctccggttctagttggcatccaa
cgtattataacagaaataattactatggcggctggggacgaccacgcggtccaggactcc
tgggtctacttttcggatttgggaggcgtggtggatatggcggaggaggtggatatggtt
atcagcctcaaggatactgtagagttgctcaattcgttgattacgtcggcccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCCAGAGTTTCCCAAGTCGAGTAAT 401 257 734 Antisense
GGGCCTTAAGCCCAATGTCAGTCTT 118 493 768 Antisense
AATGTCAGTCTTTTCTCACAAACCA 648 163 781 Antisense
CTGATGCTCAACGAGGCGGTGGTCG 459 239 842 Antisense
TGGTCGAGGTGGCGGCGGAAGAGGT 525 513 894 Antisense
GTGGATGGCATAACTCGCATAGTCA 112 491 1040 Antisense
TGAAAGCTCCGGTTCTAGTTGGCAT 617 571 1065 Antisense
ATTACTATGGCGGCTGGGGACGACC 464 3 1112 Antisense
TCCAGGACTCCTGGGTCTACTTTTC 146 591 1143 Antisense
TTCGGATTTGGGAGGCGTGGTGGAT 151 655 1165 Antisense
CAATTCGTTGATTACGTCGGCCCAA 600 179 1243 Antisense
Sequence Source Affymetrix Proprietary Database