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[185799_at]

Description C31B8.12 /REP_DB=WormBase Gene ID /WP=CE08492 /TR=O16907 /GB=AAG23971.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 73      4grp_total > 17      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 146
1 2 3 4 range
A 5.7
(-3)
A 		35.8
(-1.8)
A 		5.6
(-3)
A 		151.5
(3)
A 		146
B 33.3
(-3)
A 		95.2
(3)
A 		53.3
(-1.1)
A 		39.1
(-2.4)
A 		62
C 7
(-3)
A 		14.4
(-2.6)
A 		35
(-1.5)
A 		117.1
(3)
A 		110
avr 15.3
(-3) 		48.5
(-0.7) 		31.3
(-1.9) 		102.6
(3) 		87

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 133
1 2 3 4 5 6 range
A 15
(-3)
A 		22.5
(-2.7)
A 		107
(1.2)
A 		147.6
(3)
A 		114.9
(1.5)
P 		83.3
(0.1)
A 		133
B 35.5
(-3)
A 		75.2
(-0.5)
A 		92.5
(0.6)
A 		102.1
(1.2)
P 		130.6
(3)
P 		81.1
(-0.1)
A 		95
C 16.9
(-3)
A 		138.9
(2.8)
A 		43.8
(-1.7)
A 		143.8
(3)
A 		88.4
(0.4)
P 		83.2
(0.1)
P 		127
avr 22.5
(-3) 		78.9
(0.1) 		81.1
(0.2) 		131.2
(3) 		111.3
(1.9) 		82.5
(0.3) 		109
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 2.1
(-2.8)
A 		7.8
(-1.2)
A 		1.5
(-3)
A 		22.2
(3)
A 		21
B 10.6
(-2.1)
A 		23.5
(3)
A 		12.3
(-1.4)
A 		8.3
(-3)
A 		15
C 2.3
(-3)
A 		4.1
(-2.4)
A 		12.2
(0.4)
A 		19.7
(3)
A 		17
avr 5
(-3) 		11.8
(0.5) 		8.7
(-1.1) 		16.7
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 2.8
(-3)
A 		8
(-2.1)
A 		23.3
(0.6)
A 		37.4
(3)
A 		34.7
(2.5)
P 		20.3
(0)
A 		35
B 12.4
(-3)
A 		25
(-1.1)
A 		22.5
(-1.5)
A 		27.1
(-0.8)
P 		53.1
(3)
P 		30.2
(-0.4)
A 		41
C 6.3
(-3)
A 		42.4
(3)
A 		11.1
(-2.2)
A 		28.9
(0.8)
A 		28.6
(0.7)
P 		27.8
(0.6)
P 		36
avr 7.2
(-3) 		25.1
(0.4) 		19
(-0.8) 		31.1
(1.5) 		38.8
(3) 		26.1
(0.6) 		32
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185799_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15046
Sequence Type Exemplar sequence
Representative Public ID C31B8.12 NCBI
Target Description C31B8.12 /REP_DB=WormBase Gene ID /WP=CE08492 /TR=O16907 /GB=AAG23971.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071393(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071393 NCBI Caenorhabditis elegans C31B8.12 (C31B8.12) mRNA, complete cds. 11/11 None
GENEFINDER00000035081 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2918657:2927812:-1 11/11 None
C31B8.12 ENSEMBL cdna:known chromosome:CEL140:V:2925020:2926842:-1 gene:C31B8.12 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000035073 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2925019-2926842(-) 97.87 100.0
Public Domain and Genome References
Gene Title
Ensembl C31B8.12
Entrez Gene 183081 Entrez gene
SwissProt O16907 EMBL-EBI
WormBase CE35251 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503794 C31B8.12 [Caenorhabditis elegans] gb|AAG23971.2| Hypothetical protein C31B8.12 [Caenorhabditis elegans] 0.0
blast T32171 hypothetical protein C31B8.11 - Caenorhabditis elegans 1.0E-164
blast NP_503793 Serpentine Receptor, class H family member (srh-38) [Caenorhabditis elegans] gb|AAG23978.2| Serpentine receptor, class h protein 38 [Caenorhabditis elegans] 1.0E-162
blast AAK66036 Hypothetical protein Y82E9BL.12 [Caenorhabditis elegans] ref|NP_497379.1| Y82E9BL.12 [Caenorhabditis elegans] 1.0E-158
blast CAE66163 Hypothetical protein CBG11400 [Caenorhabditis briggsae] 1.0E-139
Protein Domains
Database ID Description E-Value
Pfam IPR002485 EMBL-EBI Protein of unknown function DUF13 1.7E-52
Pfam IPR002485 EMBL-EBI Protein of unknown function DUF13 7.9E-48
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000035081 10 54-71,474-496,509-531,551-573,594-616,657-679,781-800,835-857,878-900,915-937
Sequence
Target Sequence 
>C. ELEGANS:185799_AT
ggacactacccaacacaaaattctttggcgctgatccgattattgaaccgaatcgtcaac
tttacacagcctttgggaaatattttcctttcgctattgggaagaagcctgggttcacga
aattccgagtacttccgaaccaaaatcagaaaactagaaagtacgagtatcaagatgtca
ctacaatcccactcacctattttttgtccgatattttgggcttgaagcaaattgacattg
catggatcgacattgaaggtggcgagtttgaatttctggaccaactgcaccgaggtggcc
cactagatcaaaaaggaatcgcaatttgccaattcaacctcgaagttcattccaaatttc
atcctcctggcgctcagatctaccacgatttcgtgttcaaaatcctggaagacagacgat
acgtcttcctgaaaccagcgcacaccgattctggagtccatcgcatgttctttatcaatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGACACTACCCAACACAAAATTCTT 108 525 623 Antisense
ATTCTTTGGCGCTGATCCGATTATT 531 9 642 Antisense
CGTCAACTTTACACAGCCTTTGGGA 521 1 676 Antisense
GAAATATTTTCCTTTCGCTATTGGG 688 361 699 Antisense
TCAAGATGTCACTACAATCCCACTC 139 633 792 Antisense
CACTCACCTATTTTTTGTCCGATAT 576 197 812 Antisense
TGCACCGAGGTGGCCCACTAGATCA 131 577 908 Antisense
ATCGCAATTTGCCAATTCAACCTCG 54 37 940 Antisense
CGATACGTCTTCCTGAAACCAGCGC 380 249 1039 Antisense
ACACCGATTCTGGAGTCCATCGCAT 668 109 1064 Antisense
GTCCATCGCATGTTCTTTATCAATT 475 477 1078 Antisense
Sequence Source Affymetrix Proprietary Database