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[185798_at]

Description F28A12.3 /REP_DB=WormBase Gene ID /WP=CE09737 /TR=Q22971 /GB=AAC47988.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 23      4grp_total > 54      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 806
1 2 3 4 range
A 795.2
(3)
P 		284.1
(-1.2)
A 		154.3
(-2.2)
A 		59.5
(-3)
A 		736
B 746.1
(3)
P 		289.8
(-0.8)
P 		158.3
(-1.9)
A 		23.1
(-3)
A 		723
C 828.8
(3)
P 		321.7
(-1)
A 		164.1
(-2.3)
A 		69.4
(-3)
A 		759
avr 790
(3) 		298.5
(-1) 		158.9
(-2.1) 		50.7
(-3) 		739

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 504
1 2 3 4 5 6 range
A 403.8
(3)
P 		325.9
(1.6)
P 		304.8
(1.3)
P 		213
(-0.4)
P 		98.3
(-2.4)
A 		64.1
(-3)
A 		340
B 449.2
(3)
P 		239.8
(-0.6)
P 		413.5
(2.4)
P 		160.2
(-2)
M 		132.2
(-2.4)
A 		99.4
(-3)
A 		350
C 541
(3)
P 		280.1
(-0.1)
P 		251.1
(-0.4)
P 		217.7
(-0.8)
P 		121.7
(-2)
A 		36.8
(-3)
A 		504
avr 464.7
(3) 		281.9
(0.2) 		323.1
(0.9) 		197
(-1) 		117.4
(-2.2) 		66.8
(-3) 		398
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 285
1 2 3 4 range
A 289.5
(3)
P 		61.7
(-1.9)
A 		40.3
(-2.3)
A 		8.7
(-3)
A 		281
B 237.9
(3)
P 		71.6
(-1.3)
P 		36.7
(-2.2)
A 		4.9
(-3)
A 		233
C 274.3
(3)
P 		92.5
(-1.2)
A 		57.2
(-2)
A 		11.7
(-3)
A 		263
avr 267.2
(3) 		75.3
(-1.4) 		44.7
(-2.2) 		8.4
(-3) 		259

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 188
1 2 3 4 5 6 range
A 74.4
(0.5)
P 		115.9
(3)
P 		66.4
(0)
P 		54
(-0.7)
P 		29.7
(-2.2)
A 		15.6
(-3)
A 		100
B 156.3
(3)
P 		79.8
(-0.9)
P 		100.4
(0.2)
P 		42.4
(-2.7)
M 		53.7
(-2.2)
A 		37.1
(-3)
A 		119
C 200.5
(3)
P 		85.5
(-0.7)
P 		63.9
(-1.4)
P 		43.8
(-2)
P 		39.4
(-2.1)
A 		12.3
(-3)
A 		188
avr 143.7
(3) 		93.7
(0.5) 		76.9
(-0.3) 		46.7
(-1.8) 		40.9
(-2.1) 		21.7
(-3) 		122
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185798_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11857
Sequence Type Exemplar sequence
Representative Public ID F28A12.3 NCBI
Target Description F28A12.3 /REP_DB=WormBase Gene ID /WP=CE09737 /TR=Q22971 /GB=AAC47988.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072830(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072830 NCBI Caenorhabditis elegans F28A12.3 (F28A12.3) mRNA, complete cds. 11/11 None
SNAP00000012218 ENSEMBL cdna:SNAP chromosome:CEL140:V:8643297:8643833:-1 9/11 None
GENEFINDER00000012223 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8643297:8643932:-1 11/11 None
F28A12.3 ENSEMBL cdna:known chromosome:CEL140:V:8643297:8643932:-1 gene:F28A12.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8643297-8643933(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F28A12.3
Entrez Gene 185038 Entrez gene
SwissProt Q22971 EMBL-EBI
WormBase CE09737 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC47988 Hypothetical protein F28A12.3 [Caenorhabditis elegans] ref|NP_505231.1| F28A12.3 [Caenorhabditis elegans] 1.0E-75
blast AAC47988 Hypothetical protein F28A12.3 [Caenorhabditis elegans] ref|NP_505231.1| F28A12.3 [Caenorhabditis elegans] 3.0E-63
blast CAE58342 Hypothetical protein CBG01463 [Caenorhabditis briggsae] 4.0E-59
blast CAE58342 Hypothetical protein CBG01463 [Caenorhabditis briggsae] 3.0E-50
blast CAE58343 Hypothetical protein CBG01464 [Caenorhabditis briggsae] 8.0E-49
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505231.1 2 5-24,136-157
F28A12.3 2 5-24,136-157
SNAP00000012218 1 103-124
GENEFINDER00000012223 2 5-24,136-157
Sequence
Target Sequence 
>C. ELEGANS:185798_AT
tttcttataactccaacatacccgctccaatgccatcaatgcggaggtcaggaaaacatg
tctaagctaacaaagaaaatgttcactgaactgaatatcagccctgataagtactacgga
gattgtaaagcaacgtccggtgccgatgtttgtaccaatggaacattttgtatcaaaaga
gcaaaaatccacagagttggcttcaatagtatcaatttcaaatggacttcatacacaaag
ggatgcgctagcgttcgcgaagacaacaatcagactccatcaaacggatgttttgacttg
aaccaaaaggtcaagaaaactggatatactactgagcgcctcgattgctattgtgacaaa
gacttctgcaactcctcgacggccgtttcaatgactttcaccacagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTCTTATAACTCCAACATACCCGC 6 673 55 Antisense
ATGCCATCAATGCGGAGGTCAGGAA 406 39 84 Antisense
ATCAGCCCTGATAAGTACTACGGAG 92 27 151 Antisense
AAAGCAACGTCCGGTGCCGATGTTT 710 121 181 Antisense
GTGCCGATGTTTGTACCAATGGAAC 708 475 194 Antisense
AAATCCACAGAGTTGGCTTCAATAG 686 117 239 Antisense
AAAGGGATGCGCTAGCGTTCGCGAA 413 121 291 Antisense
GCTAGCGTTCGCGAAGACAACAATC 283 303 301 Antisense
ACTGGATATACTACTGAGCGCCTCG 527 97 373 Antisense
TGAGCGCCTCGATTGCTATTGTGAC 377 569 387 Antisense
CCGTTTCAATGACTTTCACCACAGT 464 257 437 Antisense
Sequence Source Affymetrix Proprietary Database