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[185796_at]

Description H24G06.1 /REP_DB=WormBase Gene ID /WP=CE28482 /TR=Q9UAQ2 /GB=AAC69213.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 53      6grp_high1_10_10 > 34      4grp_highest_8_8 > 51      4grp_high_8_8 > 32      6grp_highest_nonorm > 72      6grp_total > 02      4grp_total > 47      6grp_highest_sub > 02      6grp_high1_sub > 02      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 213
1 2 3 4 range
A 558.7
(3)
P 		384.7
(-1.9)
P 		346.1
(-3)
P 		406.5
(-1.3)
P 		213
B 532.6
(3)
P 		441.2
(-1.4)
P 		437.5
(-1.6)
P 		407.4
(-3)
P 		125
C 550.2
(3)
P 		442.7
(-2.8)
P 		464.2
(-1.6)
P 		438.5
(-3)
P 		112
avr 547.2
(3) 		422.9
(-2.7) 		415.9
(-3) 		417.5
(-2.9) 		131

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 427
1 2 3 4 5 6 range
A 369.1
(-1.1)
P 		660
(3)
P 		233.4
(-3)
P 		473.2
(0.4)
P 		300.5
(-2.1)
P 		429.6
(-0.2)
P 		427
B 361.3
(1.5)
P 		396.8
(3)
P 		258.2
(-3)
P 		367.9
(1.7)
P 		271.2
(-2.4)
P 		275.9
(-2.2)
P 		139
C 525.1
(2.4)
P 		412.9
(-0.9)
P 		544.8
(3)
P 		342.1
(-3)
P 		384.9
(-1.7)
P 		366.9
(-2.3)
P 		203
avr 418.5
(0.5) 		489.9
(3) 		345.5
(-2.1) 		394.4
(-0.4) 		318.9
(-3) 		357.5
(-1.6) 		171
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 144
1 2 3 4 range
A 203.4
(3)
P 		83.5
(-2)
P 		90.5
(-1.7)
P 		59.5
(-3)
P 		144
B 169.8
(3)
P 		109
(-1.4)
P 		101.4
(-1.9)
P 		86.8
(-3)
P 		83
C 182.1
(3)
P 		127.3
(-0)
P 		161.8
(1.9)
P 		73.9
(-3)
P 		108
avr 185.1
(3) 		106.6
(-1.2) 		117.9
(-0.6) 		73.4
(-3) 		112

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 184
1 2 3 4 5 6 range
A 68
(-2.4)
P 		234.7
(3)
P 		50.8
(-3)
P 		120
(-0.7)
P 		90.7
(-1.7)
P 		104.6
(-1.2)
P 		184
B 125.7
(2.4)
P 		132.1
(3)
P 		62.7
(-3)
P 		97.4
(0)
P 		110.2
(1.1)
P 		102.9
(0.5)
P 		69
C 194.6
(3)
P 		126
(-0.3)
P 		138.7
(0.3)
P 		68.8
(-3)
P 		124.5
(-0.3)
P 		122.8
(-0.4)
P 		126
avr 129.4
(0.4) 		164.3
(3) 		84.1
(-3) 		95.4
(-2.2) 		108.5
(-1.2) 		110.1
(-1.1) 		80
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185796_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11855
Sequence Type Exemplar sequence
Representative Public ID H24G06.1 NCBI
Target Description H24G06.1 /REP_DB=WormBase Gene ID /WP=CE28482 /TR=Q9UAQ2 /GB=AAC69213.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171508(11), NM_171933(11), NM_001028843(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171508 NCBI Caenorhabditis elegans H24G06.1a (H24G06.1) mRNA, complete cds. 11/11 A 
NM_171933 NCBI Caenorhabditis elegans H24G06.1b (H24G06.1) mRNA, complete cds. 11/11 A 
NM_001028843 NCBI Caenorhabditis elegans H24G06.1d (H24G06.1) mRNA, complete cds. 11/11 None
H24G06.1b ENSEMBL cdna:known chromosome:CEL140:V:9448757:9462898:1 gene:H24G06.1 11/11 A 
H24G06.1a ENSEMBL cdna:known chromosome:CEL140:V:9448757:9462898:1 gene:H24G06.1 11/11 A 
H24G06.1d.2 ENSEMBL cdna:known chromosome:CEL140:V:9451885:9462898:1 gene:H24G06.1 11/11 None
H24G06.1d.1 ENSEMBL cdna:known chromosome:CEL140:V:9456965:9462898:1 gene:H24G06.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000005042 4/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
179326 4 3 NM_001028843 174579_s_at (11), 178986_s_at (11), 185796_at (11)
NM_171508 174579_s_at (11), 178986_s_at (11), 185796_at (11)
NM_171933 174579_s_at (11), 178986_s_at (11), 185796_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9448756-9459491(+) 100.0 100.0
Public Domain and Genome References
Ensembl H24G06.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAL32229 Hypothetical protein H24G06.1a [Caenorhabditis elegans] ref|NP_741593.1| H24G06.1a [Caenorhabditis elegans] 0.0
blast AAL32230 Hypothetical protein H24G06.1b [Caenorhabditis elegans] ref|NP_741594.1| H24G06.1b [Caenorhabditis elegans] 0.0
blast T33777 hypothetical protein H24G06.1 - Caenorhabditis elegans 0.0
blast CAE72171 Hypothetical protein CBG19278 [Caenorhabditis briggsae] 0.0
blast AAV58863 Hypothetical protein H24G06.1d [Caenorhabditis elegans] ref|NP_001024014.1| H24G06.1d [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.11
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.1
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 5.6E-8
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 6.0E-7
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 2.9E-7
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.0056
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.0028
Sequence
Target Sequence 
>C. ELEGANS:185796_AT
gaactcatgatgtcgcagattgcctctcaacgcaattcgcagtctggatcctcctcccac
ttgtcatcaacgaacacatctggacgaatgaaatggggagacatgccgcagcaatccaat
aataacgactggcatccatcctcaactgtagatattcatcacgtatcaccagttatggct
acctcaatgattcctccacaaacacaacatcaatatggatatagagatcatggaacctcc
taccctatgcctgactcaactcatcctccaccacttgcaccacgaacaacatctcgagtt
ttatcaacggctccatcacaacaagctcttcaacaaattcaagcatcaagtccattccgt
cgaaagtcgatggatcgaaacagtctttccagaaggttccttgaaaatggtggagctcag
ccaaaaacagtttggagcccatctgctcttgctaatcagggagctccgcgaagaagtaac
tcgaatctatttgctgctacaaatctagaagttccaccaacttccacaaatttatcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACTCATGATGTCGCAGATTGCCT 617 349 2899 Antisense
TCAACGCAATTCGCAGTCTGGATCC 424 631 2925 Antisense
CTCCCACTTGTCATCAACGAACACA 607 233 2952 Antisense
GGAGACATGCCGCAGCAATCCAATA 556 519 2995 Antisense
TGGCATCCATCCTCAACTGTAGATA 579 545 3028 Antisense
TTATGGCTACCTCAATGATTCCTCC 520 679 3071 Antisense
TAGAGATCATGGAACCTCCTACCCT 657 651 3120 Antisense
AGTTTTATCAACGGCTCCATCACAA 533 63 3195 Antisense
TCAAGTCCATTCCGTCGAAAGTCGA 108 633 3244 Antisense
AACAGTTTGGAGCCCATCTGCTCTT 170 137 3324 Antisense
TCCACCAACTTCCACAAATTTATCC 181 589 3411 Antisense
Sequence Source Affymetrix Proprietary Database