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[185795_at]

Description C14C11.8 /REP_DB=WormBase Gene ID /WP=CE27684 /TR=Q17982 /GB=AAA96110.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 08      6grp_high1_10_10 > 43      6grp_highest_nonorm > 62      6grp_total > 0      4grp_total > 57      6grp_total_sub > Hat      6grp_cgc > 64      6grp_high1_sub > 02      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1521
1 2 3 4 range
A 48.9
(-3)
A 		1412.6
(3)
P 		1420.2
(3)
P 		78.5
(-2.9)
P 		1371
B 64.6
(-3)
A 		1507.8
(3)
P 		1497.6
(3)
P 		82.8
(-2.9)
A 		1443
C 54.8
(-3)
A 		1570.1
(3)
P 		1445.4
(2.5)
P 		103.5
(-2.8)
A 		1515
avr 56.1
(-3) 		1496.8
(3) 		1454.4
(2.8) 		88.3
(-2.9) 		1441

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1154
1 2 3 4 5 6 range
A 137.9
(-3)
P 		1292.2
(3)
P 		379.6
(-1.7)
P 		646.5
(-0.4)
P 		644.7
(-0.4)
P 		320
(-2.1)
P 		1154
B 188.6
(-3)
P 		1018.9
(3)
P 		542.7
(-0.4)
P 		525.6
(-0.6)
P 		457.1
(-1.1)
P 		378.7
(-1.6)
P 		830
C 183.2
(-3)
P 		954.7
(3)
P 		490.6
(-0.6)
P 		427.2
(-1.1)
P 		650.6
(0.6)
P 		347.5
(-1.7)
P 		772
avr 169.9
(-3) 		1088.6
(3) 		471
(-1) 		533.1
(-0.6) 		584.1
(-0.3) 		348.7
(-1.8) 		919
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 492
1 2 3 4 range
A 17.8
(-2.9)
A 		306.6
(1.9)
P 		371.3
(3)
P 		11.5
(-3)
P 		360
B 20.6
(-2.9)
A 		372.4
(3)
P 		347
(2.6)
P 		17.6
(-3)
A 		355
C 18.1
(-3)
A 		451.4
(2.4)
P 		503.8
(3)
P 		17.4
(-3)
A 		486
avr 18.8
(-2.9) 		376.8
(2.5) 		407.4
(3) 		15.5
(-3) 		392

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 434
1 2 3 4 5 6 range
A 25.4
(-3)
P 		459.6
(3)
P 		82.7
(-2.2)
P 		164
(-1.1)
P 		194.5
(-0.7)
P 		77.9
(-2.3)
P 		434
B 65.6
(-3)
P 		339.2
(3)
P 		131.8
(-1.5)
P 		139.2
(-1.4)
P 		185.7
(-0.4)
P 		141.2
(-1.3)
P 		274
C 67.9
(-3)
P 		291.3
(3)
P 		124.9
(-1.5)
P 		85.9
(-2.5)
P 		210.5
(0.8)
P 		116.3
(-1.7)
P 		223
avr 53
(-3) 		363.4
(3) 		113.1
(-1.8) 		129.7
(-1.5) 		196.9
(-0.2) 		111.8
(-1.9) 		310
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185795_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11265
Sequence Type Exemplar sequence
Representative Public ID C14C11.8 NCBI
Target Description C14C11.8 /REP_DB=WormBase Gene ID /WP=CE27684 /TR=Q17982 /GB=AAA96110.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072093(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072093 NCBI Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-13) (pqn-13) mRNA, complete cds. 11/11 None
SNAP00000024127 ENSEMBL cdna:SNAP chromosome:CEL140:V:5672610:5677084:-1 11/11 None
GENEFINDER00000024138 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5670409:5676198:-1 11/11 None
C14C11.8 ENSEMBL cdna:known chromosome:CEL140:V:5672206:5678682:-1 gene:C14C11.8 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5672609-5677443(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol pqn-13
Ensembl C14C11.8
Entrez Gene 178954 Entrez gene
SwissProt Q17982 EMBL-EBI
WormBase CE36269 Wormbase
Functional Annotations
Ortholog
ID Title Organism
MG-U74BV2:114098_AT similar to keratin associated protein 10-4; keratin associated protein 18-4 mm
Protein Similarities
Method ID Description E-Value
blast AAA96110 Prion-like-(q/n-rich)-domain-bearing protein protein 13 [Caenorhabditis elegans] ref|NP_504494.2| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-13) [Caenorhabditis elegans] 8.0E-77
blast CAE64591 Hypothetical protein CBG09346 [Caenorhabditis briggsae] 2.0E-59
blast D89042 protein F14F9.6 [imported] - Caenorhabditis elegans 3.0E-51
blast CAB03024 Hypothetical protein F30A10.7 [Caenorhabditis elegans] ref|NP_492520.1| F30A10.7 [Caenorhabditis elegans] 3.0E-50
blast AAB66101 Hypothetical protein K02F6.1 [Caenorhabditis elegans] ref|NP_494296.1| K02F6.1 [Caenorhabditis elegans] 6.0E-49
blast AAA96110 Prion-like-(q/n-rich)-domain-bearing protein protein 13 [Caenorhabditis elegans] ref|NP_504494.2| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-13) [Caenorhabditis elegans] 3.0E-19
blast CAE64591 Hypothetical protein CBG09346 [Caenorhabditis briggsae] 3.0E-19
Sequence
Target Sequence 
>C. ELEGANS:185795_AT
tcaagattctcaatcatcctgcccatccgcctgccaaccatcgtgctctcaacagtgcat
tcaggctcagaatctttgccagtctgcctgtcaaccatcctgccaatcttcatgtggtag
caatacgcaatgtgttcaggcctgtattccaagctgccaacaaacttgcggacaacaagc
tcaaccagttattgtcgttcagcagccacagcaaaacaattgcgttcaagcttgccaacc
acagtgccagcaaacctgcggatcaaatgttcaatgcgtctctgcatgccaaaacagttg
ccaacagtcgtgtggaaatcaacagcagcaacaagtgattgttgttcagtctagcccgat
gtgtggacaggcttgtcaggccccaccagtgctccaatgcgtaccacagtgtcaaccatc
atgccagccatcttgtatgcaacagtaccaattcatccaggctcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAAGATTCTCAATCATCCTGCCCA 85 633 1392 Antisense
AACCATCGTGCTCTCAACAGTGCAT 588 147 1427 Antisense
GGCTCAGAATCTTTGCCAGTCTGCC 342 539 1455 Antisense
GTTCAGGCCTGTATTCCAAGCTGCC 354 445 1525 Antisense
AGCTGCCAACAAACTTGCGGACAAC 16 81 1543 Antisense
GCTCAACCAGTTATTGTCGTTCAGC 468 301 1570 Antisense
CAATTGCGTTCAAGCTTGCCAACCA 17 181 1608 Antisense
GTTCAATGCGTCTCTGCATGCCAAA 290 445 1660 Antisense
TGTTCAGTCTAGCCCGATGTGTGGA 469 561 1734 Antisense
CGTACCACAGTGTCAACCATCATGC 458 247 1791 Antisense
AACAGTACCAATTCATCCAGGCTCC 343 137 1832 Antisense
Sequence Source Affymetrix Proprietary Database