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[185794_at]

Description K09H11.6 /REP_DB=WormBase Gene ID /WP=CE12058 /TR=O01589 /GB=AAB52265.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 90      6grp_total > 92      4grp_total > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 570
1 2 3 4 range
A 286.5
(-1.6)
P 		165.1
(-3)
A 		174.9
(-2.9)
A 		687.1
(3)
P 		522
B 263.1
(-1.3)
P 		223.9
(-1.8)
A 		125.9
(-3)
A 		598.2
(3)
P 		472
C 282.4
(-1.5)
P 		146.6
(-3)
A 		186
(-2.6)
A 		695.6
(3)
P 		549
avr 277.3
(-1.6) 		178.5
(-2.8) 		162.3
(-3) 		660.3
(3) 		498

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 237
1 2 3 4 5 6 range
A 341.5
(0.4)
P 		222.7
(-3)
P 		276.7
(-1.4)
P 		250.7
(-2.2)
P 		430.3
(3)
P 		239.4
(-2.5)
M 		208
B 295.2
(0)
P 		323.6
(1.2)
P 		218.9
(-3)
P 		369.3
(3)
P 		321.7
(1.1)
P 		245.1
(-2)
P 		150
C 193.6
(-3)
P 		349
(3)
P 		232
(-1.5)
A 		276.1
(0.2)
M 		246.1
(-1)
P 		234.8
(-1.4)
P 		155
avr 276.8
(-0.6) 		298.4
(0.8) 		242.5
(-2.8) 		298.7
(0.8) 		332.7
(3) 		239.8
(-3) 		93
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 98
1 2 3 4 range
A 104.3
(3)
P 		35.8
(-3)
A 		45.7
(-2.1)
A 		100.6
(2.7)
P 		69
B 83.9
(0.3)
P 		55.3
(-1.4)
A 		29.2
(-3)
A 		127.5
(3)
P 		98
C 93.5
(1.1)
P 		42.2
(-3)
A 		64.8
(-1.2)
A 		117.3
(3)
P 		75
avr 93.9
(1.2) 		44.4
(-3) 		46.6
(-2.8) 		115.1
(3) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 78
1 2 3 4 5 6 range
A 62.9
(-2.6)
P 		79.2
(-1.2)
P 		60.3
(-2.8)
P 		63.6
(-2.6)
P 		129.8
(3)
P 		58.3
(-3)
M 		72
B 102.7
(0.8)
P 		107.7
(1.2)
P 		53.2
(-3)
P 		97.8
(0.5)
P 		130.7
(3)
P 		91.4
(-0)
P 		78
C 71.8
(-1.1)
P 		106.5
(3)
P 		59.1
(-2.6)
A 		55.5
(-3)
M 		79.6
(-0.2)
P 		78.6
(-0.3)
P 		51
avr 79.1
(-0.7) 		97.8
(1.3) 		57.5
(-3) 		72.3
(-1.4) 		113.4
(3) 		76.1
(-1) 		56
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185794_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11830
Sequence Type Exemplar sequence
Representative Public ID K09H11.6 NCBI
Target Description K09H11.6 /REP_DB=WormBase Gene ID /WP=CE12058 /TR=O01589 /GB=AAB52265.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072106(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072106 NCBI Caenorhabditis elegans K09H11.6 (K09H11.6) mRNA, complete cds. 11/11 None
SNAP00000008372 ENSEMBL cdna:SNAP chromosome:CEL140:V:5737674:5738539:-1 11/11 None
GENEFINDER00000008383 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5737674:5738539:-1 11/11 None
K09H11.6 ENSEMBL cdna:known chromosome:CEL140:V:5737506:5738539:-1 gene:K09H11.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5737505-5738539(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K09H11.6
Entrez Gene 187246 Entrez gene
SwissProt O01589 EMBL-EBI
WormBase CE35340 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504507 K09H11.6 [Caenorhabditis elegans] gb|AAB52265.2| Hypothetical protein K09H11.6 [Caenorhabditis elegans] 4.0E-79
blast CAE64577 Hypothetical protein CBG09330 [Caenorhabditis briggsae] 4.0E-76
blast CAE64577 Hypothetical protein CBG09330 [Caenorhabditis briggsae] 2.0E-72
blast NP_504507 K09H11.6 [Caenorhabditis elegans] gb|AAB52265.2| Hypothetical protein K09H11.6 [Caenorhabditis elegans] 3.0E-71
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504507.2 4 20-42,55-77,90-112,122-144
K09H11.6 4 20-42,55-77,90-112,122-144
SNAP00000008372 4 20-42,55-77,90-112,122-144
GENEFINDER00000008383 4 20-42,55-77,90-112,122-144
Sequence
Target Sequence 
>C. ELEGANS:185794_AT
gactatcctcttctcgaaaatgaccggaaactcaccgcaaaacaatggaacagccctcgg
agttcgaattattggagcatctttcctctgcctatcaataatttcaagtgtaattgcatg
tgctttgtggaacacggaaaatcattcccttgccaataatatcatctattatgttggact
atctgcaactcaaatgctcaacattctaattgtatacctgatgaatagaggaatcacttt
gcaaaaagctcactatttacagccattcatcatttgcgcacttcttcacctcataatatg
catcctcctttctgcaatcttcttcctttacgtcgtcacccgcgccacgttctactcagt
ctggtcggatctcggcttcttcttcgtttttgtcatcttgactggcttctggatcattgc
tatctcgttggcacgcgagtacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACTATCCTCTTCTCGAAAATGACC 131 373 15 Antisense
GGAACAGCCCTCGGAGTTCGAATTA 29 529 61 Antisense
TTTCCTCTGCCTATCAATAATTTCA 71 671 96 Antisense
GAAAATCATTCCCTTGCCAATAATA 678 353 151 Antisense
CTCACTATTTACAGCCATTCATCAT 57 229 263 Antisense
CGCACTTCTTCACCTCATAATATGC 195 255 291 Antisense
ATAATATGCATCCTCCTTTCTGCAA 393 25 307 Antisense
GTTCTACTCAGTCTGGTCGGATCTC 239 443 363 Antisense
TCTTCTTCGTTTTTGTCATCTTGAC 656 615 392 Antisense
GACTGGCTTCTGGATCATTGCTATC 168 375 414 Antisense
GCTATCTCGTTGGCACGCGAGTACC 491 303 433 Antisense
Sequence Source Affymetrix Proprietary Database