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[185793_at]

Description Y73F8A.26 /REP_DB=WormBase Gene ID /WP=CE25594 /TR=Q9NA33 /GB=CAB70232.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 61      4grp_total > 57      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 252
1 2 3 4 range
A 100.2
(-3)
A 		209.5
(1.6)
A 		242.7
(3)
A 		141.6
(-1.3)
A 		143
B 99.4
(-3)
A 		241.2
(3)
A 		222.6
(2.2)
A 		116.4
(-2.3)
A 		142
C 154
(-0.4)
A 		249.2
(1.9)
A 		296.4
(3)
M 		44.9
(-3)
A 		252
avr 117.9
(-2.3) 		233.3
(2.2) 		253.9
(3) 		101
(-3) 		153

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 274
1 2 3 4 5 6 range
A 124.6
(-3)
A 		176
(-1.2)
A 		291.7
(3)
P 		264.7
(2)
P 		163.8
(-1.6)
A 		175.6
(-1.2)
A 		167
B 150.7
(-3)
A 		168.7
(-2.4)
A 		325.2
(3)
M 		284.9
(1.6)
M 		185.5
(-1.8)
A 		154.8
(-2.9)
P 		175
C 165.9
(-3)
A 		197.8
(-2.2)
A 		248.9
(-0.9)
A 		398.3
(3)
M 		193.6
(-2.3)
A 		176.1
(-2.7)
A 		232
avr 147.1
(-3) 		180.8
(-1.8) 		288.6
(2) 		316
(3) 		181
(-1.8) 		168.8
(-2.2) 		169
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 96
1 2 3 4 range
A 36.5
(-0.8)
A 		45.5
(0.5)
A 		63.4
(3)
A 		20.7
(-3)
A 		43
B 31.7
(-1.8)
A 		59.6
(3)
A 		51.6
(1.6)
A 		24.8
(-3)
A 		35
C 51
(-0.3)
A 		71.6
(1)
A 		103.3
(3)
M 		7.6
(-3)
A 		96
avr 39.7
(-0.6) 		58.9
(1.5) 		72.8
(3) 		17.7
(-3) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 23
(-3)
A 		62.6
(2.4)
A 		63.5
(2.5)
P 		67.1
(3)
P 		49.4
(0.6)
A 		42.8
(-0.3)
A 		44
B 52.4
(-3)
A 		56.2
(-2.1)
A 		79
(3)
M 		75.5
(2.2)
M 		75.4
(2.2)
A 		57.7
(-1.8)
P 		27
C 61.5
(-2.3)
A 		60.4
(-2.6)
A 		63.4
(-1.7)
A 		80.1
(3)
M 		62.7
(-1.9)
A 		58.9
(-3)
A 		21
avr 45.6
(-3) 		59.7
(-0) 		68.6
(1.8) 		74.2
(3) 		62.5
(0.5) 		53.1
(-1.4) 		29
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185793_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9211
Sequence Type Exemplar sequence
Representative Public ID Y73F8A.26 NCBI
Target Description Y73F8A.26 /REP_DB=WormBase Gene ID /WP=CE25594 /TR=Q9NA33 /GB=CAB70232.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070461(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070461 NCBI Caenorhabditis elegans Y73F8A.26 (Y73F8A.26) mRNA, complete cds. 11/11 None
SNAP00000030828 ENSEMBL cdna:SNAP chromosome:CEL140:IV:15474787:15477019:1 9/11 None
GENEFINDER00000030904 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:15474787:15477019:1 11/11 None
Y73F8A.26 ENSEMBL cdna:known chromosome:CEL140:IV:15473622:15477462:1 gene:Y73F8A.26 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:15473701-15477025(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y73F8A.26
Entrez Gene 178435 Entrez gene
SwissProt Q9NA33 EMBL-EBI
WormBase CE25594 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1585090_AT similar to Cartilage-associated protein precursor cfa
CANINE_2:CFA.14918.1.A1_AT similar to Cartilage-associated protein precursor cfa
CANINE_2:CFAAFFX.7899.1.S1_S_AT similar to Cartilage-associated protein precursor cfa
CHICKEN:GGA.4211.1.S1_AT cartilage associated protein gga
HG-U133_PLUS_2:201380_AT cartilage associated protein hs
HG-U133A:201380_AT cartilage associated protein hs
HG-FOCUS:201380_AT cartilage associated protein hs
HG-U133A_2:201380_AT cartilage associated protein hs
HG-U95AV2:40119_AT cartilage associated protein hs
HU35KSUBA:T92791_AT cartilage associated protein hs
HU35KSUBA:RC_AA424952_S_AT cartilage associated protein hs
HU35KSUBA:H47955_S_AT cartilage associated protein hs
HU35KSUBB:RC_AA025858_AT cartilage associated protein hs
HU35KSUBC:RC_N48288_AT cartilage associated protein hs
HU35KSUBC:RC_AA454660_AT cartilage associated protein hs
HU35KSUBD:RC_H98817_AT cartilage associated protein hs
HG-U133_PLUS_2:227138_AT cartilage associated protein hs
HG-U133B:227138_AT cartilage associated protein hs
U133_X3P:G5453600_3P_AT cartilage associated protein hs
U133_X3P:HS2.155481.3.S1_3P_S_AT cartilage associated protein hs
U133_X3P:HS2.155481.2.S1_3P_S_AT cartilage associated protein hs
U133_X3P:HS.281561.0.S1_3P_AT cartilage associated protein hs
U133_X3P:HS.155481.1.A1_3P_AT cartilage associated protein hs
HG-U133_PLUS_2:1554464_A_AT cartilage associated protein hs
HG-U133_PLUS_2:1555889_A_AT cartilage associated protein hs
HG-U133_PLUS_2:226656_AT cartilage associated protein hs
HG-U133B:226656_AT cartilage associated protein hs
HG-U95B:48507_AT cartilage associated protein hs
HG-U95C:53153_R_AT cartilage associated protein hs
HG-U95B:58018_AT cartilage associated protein hs
HG-U95B:59073_AT cartilage associated protein hs
HG-U95C:63705_F_AT cartilage associated protein hs
HG-U95C:63906_F_AT cartilage associated protein hs
HU35KSUBC:RC_AA599526_AT Cartilage associated protein hs
MG-U74AV2:103817_AT cartilage associated protein mm
MOE430A:1448592_AT cartilage associated protein mm
MOUSE430A_2:1448592_AT cartilage associated protein mm
MOUSE430_2:1448592_AT cartilage associated protein mm
MU19KSUBA:TC14858_AT Cartilage associated protein (Crtap), mRNA mm
MU19KSUBC:TC37377_AT Cartilage associated protein (Crtap), mRNA mm
MU19KSUBC:TC37377_G_AT Cartilage associated protein (Crtap), mRNA mm
RG-U34A:RC_AA891769_AT similar to Cartilage-associated protein precursor rn
RAE230A:1375725_AT Similar to Cartilage-associated protein precursor rn
RAT230_2:1375725_AT Similar to Cartilage-associated protein precursor rn
Protein Similarities
Method ID Description E-Value
blast CAB70232 Hypothetical protein Y73F8A.26 [Caenorhabditis elegans] ref|NP_502862.1| Y73F8A.26 [Caenorhabditis elegans] 0.0
blast CAE68083 Hypothetical protein CBG13716 [Caenorhabditis briggsae] 0.0
blast CAE68083 Hypothetical protein CBG13716 [Caenorhabditis briggsae] 1.0E-180
blast CAB70232 Hypothetical protein Y73F8A.26 [Caenorhabditis elegans] ref|NP_502862.1| Y73F8A.26 [Caenorhabditis elegans] 1.0E-107
blast CAE68083 Hypothetical protein CBG13716 [Caenorhabditis briggsae] 1.0E-78
blast XP_392718 PREDICTED: similar to ENSANGP00000017205 [Apis mellifera] 9.0E-38
Sequence
Target Sequence 
>C. ELEGANS:185793_AT
atgtaggacatttgtttgccgcgcactttgagtacctgcatttttgtcattttaagatgc
agcggggcgctgaagcggctcaaactgtcgccaattatctcctctttgacgacagcccat
tgatgagacgaaatcggtatttctacgggaaacagtacaaaaagaatgagctcttcacgc
cgagccaagaagttttggatatttatcggcgaagagaccttgaagcccgatttttagagt
ttatggagaagcgattcgtggtgaaggacggcgagctcccaccagaacaagccgacgacc
gtaacccgttatcactggatatccacgtggaggataacttcccatacgagcagattccaa
gtttgatgacgtcatcagagtgtaaaatcctccgctcagcgctggacaccagagaacggg
acgggtttgtgaaggagttggagcaaagagtcaagctctggccaaactcctcatattcca
at

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTAGGACATTTGTTTGCCGCGCA 694 47 815 Antisense
CGCGCACTTTGAGTACCTGCATTTT 561 255 834 Antisense
TGAAGCGGCTCAAACTGTCGCCAAT 613 573 885 Antisense
CAATTATCTCCTCTTTGACGACAGC 335 179 906 Antisense
GCTCTTCACGCCGAGCCAAGAAGTT 648 299 984 Antisense
GAGACCTTGAAGCCCGATTTTTAGA 670 385 1028 Antisense
GTGGTGAAGGACGGCGAGCTCCCAC 342 489 1072 Antisense
GACCGTAACCCGTTATCACTGGATA 510 379 1111 Antisense
AACTTCCCATACGAGCAGATTCCAA 390 139 1150 Antisense
CAGAGTGTAAAATCCTCCGCTCAGC 469 201 1190 Antisense
CTGGCCAAACTCCTCATATTCCAAT 185 241 1272 Antisense
Sequence Source Affymetrix Proprietary Database