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[185792_at]

Description H12D21.10 /REP_DB=WormBase Gene ID /WP=CE19923 /TR=Q9XTX0 /GB=CAB07427.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 63      4grp_high_8_8 > 15      6grp_total > 62      4grp_total > 0      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 149
1 2 3 4 range
A 102
(-3)
P 		124.3
(-0.5)
P 		145.4
(1.9)
P 		154.7
(3)
P 		53
B 156
(-0.1)
P 		116.2
(-3)
P 		136.3
(-1.5)
P 		197.3
(3)
P 		81
C 111.1
(-2)
P 		86
(-3)
A 		150.4
(-0.4)
P 		235.4
(3)
P 		149
avr 123
(-2) 		108.8
(-3) 		144
(-0.6) 		195.8
(3) 		87

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 206
1 2 3 4 5 6 range
A 106.3
(-3)
A 		201.1
(0.7)
P 		260
(3)
P 		225.1
(1.6)
P 		134.8
(-1.9)
P 		158
(-1)
P 		154
B 85.2
(-3)
P 		145.1
(-0.5)
P 		208.3
(2.1)
P 		229
(3)
P 		97.4
(-2.5)
P 		157
(-0)
P 		144
C 175.5
(-1.1)
P 		185.2
(-0.8)
P 		291.3
(3)
P 		203.8
(-0.1)
P 		159.4
(-1.7)
P 		122.7
(-3)
P 		169
avr 122.3
(-3) 		177.1
(-0.5) 		253.2
(3) 		219.3
(1.4) 		130.5
(-2.6) 		145.9
(-1.9) 		131
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 37.1
(2.6)
P 		27
(-1.3)
P 		38
(3)
P 		22.6
(-3)
P 		15
B 49.8
(3)
P 		28.7
(-3)
P 		31.6
(-2.2)
P 		42
(0.8)
P 		21
C 36.8
(-0.4)
P 		24.7
(-3)
A 		52.4
(3)
P 		39.7
(0.2)
P 		28
avr 41.2
(3) 		26.8
(-3) 		40.7
(2.8) 		34.8
(0.3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 19.6
(-3)
A 		71.5
(3)
P 		56.6
(1.3)
P 		57.1
(1.3)
P 		40.7
(-0.6)
P 		38.5
(-0.8)
P 		52
B 29.6
(-3)
P 		48.3
(0.6)
P 		50.6
(1.1)
P 		60.7
(3)
P 		39.6
(-1.1)
P 		58.5
(2.6)
P 		31
C 65.1
(1.4)
P 		56.5
(-0.2)
P 		74.1
(3)
P 		41
(-3)
P 		51.6
(-1.1)
P 		41.1
(-3)
P 		33
avr 38.1
(-3) 		58.8
(2.6) 		60.4
(3) 		52.9
(1) 		44
(-1.4) 		46
(-0.9) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185792_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12524
Sequence Type Exemplar sequence
Representative Public ID H12D21.10 NCBI
Target Description H12D21.10 /REP_DB=WormBase Gene ID /WP=CE19923 /TR=Q9XTX0 /GB=CAB07427.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074276(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074276 NCBI Caenorhabditis elegans H12D21.10 (H12D21.10) mRNA, complete cds. 11/11 None
SNAP00000026971 ENSEMBL cdna:SNAP chromosome:CEL140:V:14913741:14914422:1 11/11 None
GENEFINDER00000026976 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14913323:14914422:1 11/11 None
H12D21.10 ENSEMBL cdna:known chromosome:CEL140:V:14902385:14914456:1 gene:H12D21.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14913322-14914422(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl H12D21.10
Entrez Gene 179990 Entrez gene
WormBase CE38966 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.10800.1.S1_S_AT glycosyltransferase AER61 cfa
DROSOPHILA_2:1631672_AT dm
DROSGENOME1:152010_AT dm
CHICKEN:GGA.2971.2.S1_AT similar to hypothetical protein gga
CHICKEN:GGAAFFX.8545.1.S1_S_AT similar to hypothetical protein gga
CHICKEN:GGAAFFX.8545.2.S1_AT similar to hypothetical protein gga
MG-U74BV2:114140_AT RIKEN cDNA A130022J15 gene mm
MOE430A:1454678_S_AT RIKEN cDNA A130022J15 gene mm
MOUSE430A_2:1454678_S_AT RIKEN cDNA A130022J15 gene mm
MOUSE430_2:1454678_S_AT RIKEN cDNA A130022J15 gene mm
MOE430A:1433671_AT RIKEN cDNA A130022J15 gene mm
MOUSE430A_2:1433671_AT RIKEN cDNA A130022J15 gene mm
MOUSE430_2:1433671_AT RIKEN cDNA A130022J15 gene mm
MOE430B:1434492_AT RIKEN cDNA A130022J15 gene mm
MOUSE430_2:1434492_AT RIKEN cDNA A130022J15 gene mm
MG-U74AV2:93175_AT RIKEN cDNA A130022J15 gene (A130022J15Rik), mRNA mm
MU11KSUBA:D19017_RC_AT RIKEN cDNA A130022J15 gene (A130022J15Rik), mRNA mm
MU19KSUBA:TC25517_AT RIKEN cDNA A130022J15 gene (A130022J15Rik), mRNA mm
RAE230B:1385230_AT glycosyltransferase Aer61 rn
RAT230_2:1385230_AT glycosyltransferase Aer61 rn
RAE230B:1393107_AT Glycosyltransferase Aer61 rn
RAT230_2:1393107_AT Glycosyltransferase Aer61 rn
RG-U34C:RC_AI230699_AT Glycosyltransferase Aer61 rn
Protein Similarities
Method ID Description E-Value
blast NP_506677 H12D21.10 [Caenorhabditis elegans] 0.0
blast CAB07427 Hypothetical protein H12D21.10 [Caenorhabditis elegans] 0.0
blast CAI30565 glycosyltransferase [Caenorhabditis briggsae] 0.0
blast NP_506677 H12D21.10 [Caenorhabditis elegans] 9.0E-79
blast CAB07427 Hypothetical protein H12D21.10 [Caenorhabditis elegans] 9.0E-79
blast CAE66355 Hypothetical protein CBG11610 [Caenorhabditis briggsae] 4.0E-70
blast NP_506677 H12D21.10 [Caenorhabditis elegans] 1.0E-67
Protein Domains
Database ID Description E-Value
Pfam IPR007657 EMBL-EBI Protein of unknown function DUF563 2.6E-7
Pfam IPR007657 EMBL-EBI Protein of unknown function DUF563 1.7E-11
Sequence
Target Sequence 
>C. ELEGANS:185792_AT
gcacggagcaggacttactcatttgctttttttgccagattgggccgcggtatttgaaat
atacaattgcggagatcccggatgctactcggacttggcgagattgagaggcgttaaata
ttacacctggccagaagccaagattaatttgatccgttccgatgaagaaggaaaacatcc
acaaagtggagaaaaacatctcaagtttgctaattaccatgtcgacccaattgaattccg
agaacaagtgagaaagatggttgatcatgtacgtgctcacccaaagttcatcaattctcg
gcgagca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCACGGAGCAGGACTTACTCATTTG 490 315 114 Antisense
TCATTTGCTTTTTTTGCCAGATTGG 554 619 132 Antisense
CCAGATTGGGCCGCGGTATTTGAAA 228 251 148 Antisense
ATTGCGGAGATCCCGGATGCTACTC 266 7 179 Antisense
GGATGCTACTCGGACTTGGCGAGAT 25 515 193 Antisense
GCGTTAAATATTACACCTGGCCAGA 80 291 224 Antisense
GTTTGCTAATTACCATGTCGACCCA 493 451 318 Antisense
ATGTCGACCCAATTGAATTCCGAGA 418 47 332 Antisense
TGGTTGATCATGTACGTGCTCACCC 426 551 371 Antisense
TGTACGTGCTCACCCAAAGTTCATC 406 559 381 Antisense
AAAGTTCATCAATTCTCGGCGAGCA 1 123 396 Antisense
Sequence Source Affymetrix Proprietary Database