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[185791_s_at]

Description R09E12.3 /REP_DB=WormBase Gene ID /WP=CE12646 /TR=O16259 /GB=AAG24172.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 73      6grp_high1_10_10 > 37      6grp_highest_nonorm > 91      6grp_total > 45      4grp_total > 32      6grp_highest_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 149
1 2 3 4 range
A 162
(-3)
M 		268.6
(1.3)
A 		310.9
(3)
P 		275
(1.6)
P 		149
B 163.4
(-3)
A 		216.8
(1.1)
A 		242.4
(3)
P 		230.4
(2.1)
P 		79
C 168.3
(-3)
M 		261.7
(1.8)
A 		282.9
(2.8)
P 		286.1
(3)
P 		118
avr 164.6
(-3) 		249
(1.4) 		278.7
(3) 		263.8
(2.2) 		114

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 147
1 2 3 4 5 6 range
A 281.5
(3)
P 		184.9
(-1.7)
P 		180.8
(-1.9)
P 		159
(-3)
P 		195.2
(-1.2)
P 		220.5
(0)
P 		123
B 199.2
(-1.9)
P 		288
(3)
P 		210.4
(-1.3)
P 		206.2
(-1.6)
P 		180.2
(-3)
P 		238.8
(0.3)
P 		108
C 199.3
(-0.1)
P 		141.2
(-3)
P 		261.4
(3)
P 		192.7
(-0.4)
P 		169.9
(-1.6)
P 		206.6
(0.3)
P 		120
avr 226.7
(3) 		204.7
(0.1) 		217.5
(1.8) 		186
(-2.4) 		181.8
(-3) 		222
(2.4) 		45
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 59
(-0.3)
M 		58.3
(-0.4)
A 		81.3
(3)
P 		40.3
(-3)
P 		41
B 52.1
(-0.5)
A 		53.5
(0.7)
A 		56.2
(3)
P 		49.1
(-3)
P 		7
C 55.7
(-2.1)
M 		75.2
(0.2)
A 		98.6
(3)
P 		48.2
(-3)
P 		50
avr 55.6
(-1.2) 		62.3
(-0) 		78.7
(3) 		45.9
(-3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 51.9
(-0.2)
P 		65.8
(3)
P 		39.4
(-3)
P 		40.3
(-2.8)
P 		58.9
(1.4)
P 		53.7
(0.3)
P 		26
B 69.3
(-0.6)
P 		95.8
(3)
P 		51.1
(-3)
P 		54.6
(-2.5)
P 		73.2
(-0)
P 		89
(2.1)
P 		45
C 73.9
(3)
P 		43.1
(-2.3)
P 		66.5
(1.7)
P 		38.8
(-3)
P 		55
(-0.2)
P 		69.2
(2.2)
P 		35
avr 65
(1.7) 		68.2
(2.4) 		52.3
(-1.2) 		44.6
(-3) 		62.4
(1.1) 		70.6
(3) 		26
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185791_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15032
Sequence Type Exemplar sequence
Representative Public ID R09E12.3 NCBI
Target Description R09E12.3 /REP_DB=WormBase Gene ID /WP=CE12646 /TR=O16259 /GB=AAG24172.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070921(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070921 NCBI Caenorhabditis elegans R09E12.3 (R09E12.3) mRNA, complete cds. 11/11 None
SNAP00000015613 ENSEMBL cdna:SNAP chromosome:CEL140:V:773421:774545:1 11/11 None
GENEFINDER00000015618 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:771967:774545:1 11/11 None
R09E12.3 ENSEMBL cdna:known chromosome:CEL140:V:773389:774670:1 gene:R09E12.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:773420-774545(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R09E12.3
Entrez Gene 178587 Entrez gene
SwissProt O16259 EMBL-EBI
WormBase CE12646 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:262691_AT stress-inducible protein, putative at
CANINE:1604213_AT similar to Stress-induced-phosphoprotein 1 (STI1) (Hsc70/Hsp90-organizing protein) (Hop) (Transformation-sensitive protein IEF SSP 3521) cfa
CANINE_2:CFA.10931.1.A1_AT similar to Stress-induced-phosphoprotein 1 (STI1) (Hsc70/Hsp90-organizing protein) (Hop) (Transformation-sensitive protein IEF SSP 3521) cfa
CANINE_2:CFA.20852.1.S1_S_AT similar to Stress-induced-phosphoprotein 1 (STI1) (Hsc70/Hsp90-organizing protein) (Hop) (Transformation-sensitive protein IEF SSP 3521) cfa
CANINE_2:CFAAFFX.22648.1.S1_AT similar to Stress-induced-phosphoprotein 1 (STI1) (Hsc70/Hsp90-organizing protein) (Hop) (Transformation-sensitive protein IEF SSP 3521) cfa
DROSOPHILA_2:1630076_AT Hsp70/Hsp90 organizing protein homolog dm
DROSGENOME1:144017_AT Hsp70/Hsp90 organizing protein homolog dm
HG-U95AV2:207_AT stress-induced-phosphoprotein 1 (Hsp70/Hsp90-organizing protein) hs
HC-G110:207_AT stress-induced-phosphoprotein 1 (Hsp70/Hsp90-organizing protein) hs
HG-U133A_2:213330_S_AT stress-induced-phosphoprotein 1 (Hsp70/Hsp90-organizing protein) hs
HG-FOCUS:213330_S_AT stress-induced-phosphoprotein 1 (Hsp70/Hsp90-organizing protein) hs
HG-U133_PLUS_2:213330_S_AT stress-induced-phosphoprotein 1 (Hsp70/Hsp90-organizing protein) hs
HG-U133A:213330_S_AT stress-induced-phosphoprotein 1 (Hsp70/Hsp90-organizing protein) hs
HUGENEFL:M86752_AT stress-induced-phosphoprotein 1 (Hsp70/Hsp90-organizing protein) hs
U133_X3P:HS.75612.2.A1_3P_A_AT stress-induced-phosphoprotein 1 (Hsp70/Hsp90-organizing protein) hs
U133_X3P:HS.75612.1.A1_3P_A_AT stress-induced-phosphoprotein 1 (Hsp70/Hsp90-organizing protein) hs
HG-U133A_2:212009_S_AT stress-induced-phosphoprotein 1 (Hsp70/Hsp90-organizing protein) hs
HG-U133_PLUS_2:212009_S_AT stress-induced-phosphoprotein 1 (Hsp70/Hsp90-organizing protein) hs
HG-U133A:212009_S_AT stress-induced-phosphoprotein 1 (Hsp70/Hsp90-organizing protein) hs
MOE430A:1415909_AT stress-induced phosphoprotein 1 mm
MOUSE430A_2:1415909_AT stress-induced phosphoprotein 1 mm
MOUSE430_2:1415909_AT stress-induced phosphoprotein 1 mm
MU11KSUBA:U27830_S_AT stress-induced phosphoprotein 1 mm
MG-U74AV2:100081_AT stress-induced phosphoprotein 1 mm
MG-U74CV2:171530_R_AT stress-induced phosphoprotein 1 mm
RT-U34:Y15068_AT stress-induced-phosphoprotein 1 rn
RG-U34A:Y15068_AT stress-induced-phosphoprotein 1 rn
RG-U34B:RC_AA900247_AT stress-induced-phosphoprotein 1 rn
RAE230A:1398877_AT stress-induced-phosphoprotein 1 rn
RAT230_2:1398877_AT stress-induced-phosphoprotein 1 rn
YEAST_2:1777302_AT Hsp90 cochaperone, interacts with the Ssa group of the cytosolic Hsp70 chaperones; activates the ATPase activity of Ssa1p; homolog of mammalian Hop protein Sc
Protein Similarities
Method ID Description E-Value
blast AAG24172 Hypothetical protein R09E12.3 [Caenorhabditis elegans] ref|NP_503322.1| R09E12.3 [Caenorhabditis elegans] 1.0E-171
blast AAG24172 Hypothetical protein R09E12.3 [Caenorhabditis elegans] ref|NP_503322.1| R09E12.3 [Caenorhabditis elegans] 1.0E-170
blast CAE60769 Hypothetical protein CBG04457 [Caenorhabditis briggsae] 1.0E-157
blast CAE60769 Hypothetical protein CBG04457 [Caenorhabditis briggsae] 1.0E-156
blast EAA13803 ENSANGP00000012254 [Anopheles gambiae str. PEST] ref|XP_319365.2| ENSANGP00000012254 [Anopheles gambiae str. PEST] 6.0E-98
Protein Domains
Database ID Description E-Value
Pfam IPR001440 EMBL-EBI TPR repeat 2.5E-10
Pfam IPR001440 EMBL-EBI TPR repeat 1.5E-4
Pfam IPR001440 EMBL-EBI TPR repeat 0.0042
Pfam IPR001440 EMBL-EBI TPR repeat 7.2E-9
Pfam IPR001440 EMBL-EBI TPR repeat 1.9E-7
Pfam IPR001440 EMBL-EBI TPR repeat 1.2E-6
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 5.7E-5
Pfam IPR001440 EMBL-EBI TPR repeat 2.5E-10
Pfam IPR001440 EMBL-EBI TPR repeat 1.5E-4
Pfam IPR001440 EMBL-EBI TPR repeat 0.0042
Pfam IPR001440 EMBL-EBI TPR repeat 7.2E-9
Pfam IPR001440 EMBL-EBI TPR repeat 1.9E-7
Pfam IPR001440 EMBL-EBI TPR repeat 1.2E-6
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000015618 2 4-23,44-66
Sequence
Target Sequence 
>C. ELEGANS:185791_S_AT
agcagttgaaggcggccgagcgtcttgcctatatcaatccagagcttgcccaggaggaga
agaacaagggaaacgagtatttcaagaagggcgactatccgacagcgatgaggcactaca
acgaagcggtgaagcgtgatccggagaacgcgattttgtactcaaaccgggccgcgtgtc
tgacgaaattgatggaattccagagagctcttgatgattgtgacacttgtattcggctgg
actcgaaatttatcaagggatacatccgcaaagccgcttgcctcgtcgcaatgcgtgagt
ggtcgaaggctcagcgagcctacgaagatgctctccaagtcgacccatccaacgaagaag
cccgtgaaggtgtgcgtaactgtctgcgaagcaacgacgaggatcccgagaaggccaagg
agagaagtctcgccgatccagaagttcaggagattctccgcgacccaggaatgcgtatga
ttctcgagcagatgagcaacgacccggga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCAGTTGAAGGCGGCCGAGCGTCT 639 65 383 Antisense
GCGTCTTGCCTATATCAATCCAGAG 477 291 402 Antisense
GCGACTATCCGACAGCGATGAGGCA 644 289 473 Antisense
TGACACTTGTATTCGGCTGGACTCG 66 571 603 Antisense
AAGGGATACATCCGCAAAGCCGCTT 168 159 637 Antisense
GGCTCAGCGAGCCTACGAAGATGCT 8 539 690 Antisense
AGGTGTGCGTAACTGTCTGCGAAGC 549 57 750 Antisense
GCAACGACGAGGATCCCGAGAAGGC 653 317 773 Antisense
AGAAGTCTCGCCGATCCAGAAGTTC 258 75 805 Antisense
TTCTCCGCGACCCAGGAATGCGTAT 416 691 836 Antisense
CGAGCAGATGAGCAACGACCCGGGA 570 247 867 Antisense
Sequence Source Affymetrix Proprietary Database