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[185790_at]

Description Y57A10A.5 /REP_DB=WormBase Gene ID /WP=CE22607 /TR=Q9NA87 /GB=CAB55010.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 86      4grp_total > 35      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 32.8
(0.7)
A 		41.9
(2.2)
A 		10.2
(-3)
A 		46.6
(3)
A 		36
B 35.8
(-0.8)
P 		67.8
(3)
P 		36.8
(-0.7)
A 		17.7
(-3)
A 		50
C 3.9
(-3)
A 		46.6
(3)
A 		30.6
(0.8)
A 		45.2
(2.8)
A 		43
avr 24.2
(-3) 		52.1
(3) 		25.9
(-2.6) 		36.5
(-0.4) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 99
1 2 3 4 5 6 range
A 4
(-3)
A 		26.5
(-1)
A 		35.5
(-0.2)
A 		24.5
(-1.2)
A 		72.4
(3)
P 		60.4
(1.9)
P 		68
B 26.5
(-2.7)
A 		22.2
(-3)
A 		39.1
(-1.7)
A 		43.7
(-1.4)
A 		50.3
(-0.9)
A 		103.2
(3)
P 		81
C 38.1
(-0)
A 		14.6
(-3)
A 		44.4
(0.7)
A 		61.3
(2.9)
A 		47.8
(1.2)
A 		62.3
(3)
P 		48
avr 22.9
(-2.8) 		21.1
(-3) 		39.7
(-0.9) 		43.2
(-0.6) 		56.8
(1) 		75.3
(3) 		54
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 11.9
(3)
A 		9.1
(1.2)
A 		2.7
(-3)
A 		6.8
(-0.3)
A 		9
B 11.4
(0.5)
P 		16.8
(3)
P 		8.5
(-0.8)
A 		3.8
(-3)
A 		13
C 1.3
(-3)
A 		13.4
(3)
A 		10.7
(1.7)
A 		7.6
(0.1)
A 		12
avr 8.2
(-1.2) 		13.1
(3) 		7.3
(-2) 		6.1
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 0.7
(-3)
A 		9.4
(-0.5)
A 		7.7
(-1)
A 		6.2
(-1.4)
A 		21.8
(3)
P 		14.7
(1)
P 		21
B 9.2
(-2.7)
A 		7.4
(-3)
A 		9.5
(-2.6)
A 		11.6
(-2.2)
A 		20.4
(-0.5)
A 		38.5
(3)
P 		31
C 14.1
(0.5)
A 		4.5
(-3)
A 		11.3
(-0.5)
A 		12.3
(-0.1)
A 		15.5
(1)
A 		20.8
(3)
P 		16
avr 8
(-2.7) 		7.1
(-3) 		9.5
(-2.2) 		10
(-2) 		19.2
(1.1) 		24.7
(3) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185790_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3748
Sequence Type Exemplar sequence
Representative Public ID Y57A10A.5 NCBI
Target Description Y57A10A.5 /REP_DB=WormBase Gene ID /WP=CE22607 /TR=Q9NA87 /GB=CAB55010.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064184(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064184 NCBI Caenorhabditis elegans Y57A10A.5 (Y57A10A.5) mRNA, complete cds. 11/11 None
SNAP00000026016 ENSEMBL cdna:SNAP chromosome:CEL140:II:12154415:12156475:1 11/11 None
GENEFINDER00000026047 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12154415:12156475:1 11/11 None
Y57A10A.5 ENSEMBL cdna:known chromosome:CEL140:II:12154415:12156475:1 gene:Y57A10A.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12154411-12156472(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y57A10A.5
Entrez Gene 174856 Entrez gene
SwissProt Q9NA87 EMBL-EBI
WormBase CE22607 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB55010 Hypothetical protein Y57A10A.5 [Caenorhabditis elegans] ref|NP_496585.1| Y57A10A.5 [Caenorhabditis elegans] 0.0
blast CAB55012 Hypothetical protein Y57A10A.7 [Caenorhabditis elegans] ref|NP_496587.1| Y57A10A.7 [Caenorhabditis elegans] 1.0E-149
blast CAB07287 Hypothetical protein T28A8.3 [Caenorhabditis elegans] ref|NP_499795.1| T28A8.3 [Caenorhabditis elegans] 1.0E-137
Protein Domains
Database ID Description E-Value
Pfam IPR006570 EMBL-EBI SPK 4.8E-65
Pfam IPR006570 EMBL-EBI SPK 4.2E-67
Sequence
Target Sequence 
>C. ELEGANS:185790_AT
gtggaaggccagccaaaacctgaaccgattgatttcgaatttgatcaaaccaataataga
gatgtatcacacagtttgaatattaataatttgcgagaaaatggagaagtcagcaacaat
ccgtcaatttctgaaataaaagttgattttccattcttcgaacgtcagcaattcagtgta
cccacgaataatggagccacttcagctgaatcaagagctatttatatgcatgatttcctg
aaagaagtgatcgaattcatttgctttctcgaaaggacagagctcattgagatcaagaaa
caaatcaaaaaatcgattggaacggatgatgataagaacctgcaaatcactgatattcgt
aaaatgctggagtcattcttcttcgggatcagcagaaaaatcagatcagtttcttcctat
aactcgacttcttctgatatgttggcgaaggatttcctgcttaaattcaagttatttctt
ctcggattggacaattcagagcttatagagcttcagcggaaggttcaagccgaaatggat
gagccgaaattggcacagaagattcttctggacagcgacgttcgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGGAAGGCCAGCCAAAACCTGAAC 551 491 1105 Antisense
AGTCAGCAACAATCCGTCAATTTCT 368 61 1212 Antisense
GAGCTATTTATATGCATGATTTCCT 476 387 1319 Antisense
GTGATCGAATTCATTTGCTTTCTCG 132 485 1351 Antisense
GAACCTGCAAATCACTGATATTCGT 129 347 1440 Antisense
AAATCAGATCAGTTTCTTCCTATAA 649 117 1502 Antisense
CTTCCTATAACTCGACTTCTTCTGA 333 219 1517 Antisense
CTCGACTTCTTCTGATATGTTGGCG 314 233 1527 Antisense
GTTGGCGAAGGATTTCCTGCTTAAA 454 433 1545 Antisense
GAGCTTCAGCGGAAGGTTCAAGCCG 429 387 1612 Antisense
GATTCTTCTGGACAGCGACGTTCGT 560 431 1665 Antisense
Sequence Source Affymetrix Proprietary Database