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[185789_at]

Description Y47H10A.4 /REP_DB=WormBase Gene ID /WP=CE24377 /TR=Q9U2B5 /GB=CAB60386.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 50      4grp_highest_8_8 > 13      4grp_high_8_8 > 31      6grp_total > 30      4grp_total > 24      6grp_high1_sub > 03_04      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 124
1 2 3 4 range
A 170.4
(-1.3)
P 		135.9
(-3)
P 		212.7
(0.7)
P 		259.6
(3)
P 		124
B 162.2
(-3)
P 		193.8
(-0.8)
P 		224.4
(1.3)
P 		249.9
(3)
P 		88
C 158.1
(-3)
P 		217.9
(2.3)
P 		226
(3)
P 		208.9
(1.5)
P 		68
avr 163.6
(-3) 		182.5
(-1.5) 		221
(1.5) 		239.5
(3) 		76

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 129
1 2 3 4 5 6 range
A 142.5
(-3)
M 		207.7
(0.4)
P 		257.2
(3)
P 		210
(0.5)
P 		147.8
(-2.7)
A 		151.3
(-2.5)
M 		115
B 148.4
(-0.6)
P 		178.7
(3)
P 		160.6
(0.9)
P 		129.4
(-2.8)
A 		141.9
(-1.3)
P 		127.9
(-3)
P 		51
C 191.1
(-0)
P 		211.3
(1)
P 		252.2
(3)
P 		191.1
(-0)
M 		140.5
(-2.5)
P 		130.4
(-3)
P 		122
avr 160.7
(-1.3) 		199.2
(1.3) 		223.3
(3) 		176.8
(-0.2) 		143.4
(-2.5) 		136.5
(-3) 		87
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 62
(3)
P 		29.5
(-3)
P 		55.6
(1.8)
P 		38
(-1.4)
P 		33
B 51.7
(1.3)
P 		47.9
(-3)
P 		52
(1.6)
P 		53.2
(3)
P 		5
C 52.3
(-0.6)
P 		62.6
(0.8)
P 		78.8
(3)
P 		35.2
(-3)
P 		44
avr 55.3
(1) 		46.7
(-1.6) 		62.1
(3) 		42.1
(-3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 26.3
(-3)
M 		73.9
(3)
P 		56
(0.7)
P 		53.3
(0.4)
P 		44.6
(-0.7)
A 		36.8
(-1.7)
M 		48
B 51.6
(1.1)
P 		59.5
(3)
P 		39
(-1.9)
P 		34.3
(-3)
A 		57.7
(2.6)
P 		47.7
(0.2)
P 		25
C 70.8
(3)
P 		64.5
(1.8)
P 		64.2
(1.8)
P 		38.4
(-3)
M 		45.5
(-1.7)
P 		43.7
(-2)
P 		32
avr 49.6
(-1.1) 		66
(3) 		53.1
(-0.2) 		42
(-3) 		49.3
(-1.2) 		42.7
(-2.8) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185789_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1902
Sequence Type Exemplar sequence
Representative Public ID Y47H10A.4 NCBI
Target Description Y47H10A.4 /REP_DB=WormBase Gene ID /WP=CE24377 /TR=Q9U2B5 /GB=CAB60386.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060654(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060654 NCBI Caenorhabditis elegans Y47H10A.4 (Y47H10A.4) mRNA, complete cds. 11/11 None
SNAP00000005127 ENSEMBL cdna:SNAP chromosome:CEL140:I:12096283:12102602:-1 11/11 None
GENEFINDER00000005132 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12099782:12102602:-1 11/11 None
Y47H10A.4 ENSEMBL cdna:known chromosome:CEL140:I:12099763:12102602:-1 gene:Y47H10A.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12099712-12102533(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y47H10A.4
Entrez Gene 173090 Entrez gene
SwissProt Q9U2B5 EMBL-EBI
WormBase CE24377 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60386 Hypothetical protein Y47H10A.4 [Caenorhabditis elegans] ref|NP_493055.1| Y47H10A.4 [Caenorhabditis elegans] 0.0
blast CAB60385 Hypothetical protein Y47H10A.3 [Caenorhabditis elegans] ref|NP_493054.2| Y47H10A.3 [Caenorhabditis elegans] 1.0E-164
blast CAB60385 Hypothetical protein Y47H10A.3 [Caenorhabditis elegans] ref|NP_493054.2| Y47H10A.3 [Caenorhabditis elegans] 1.0E-102
blast CAB60387 Hypothetical protein Y47H10A.5 [Caenorhabditis elegans] ref|NP_493056.1| Y47H10A.5 [Caenorhabditis elegans] 4.0E-96
Sequence
Target Sequence 
>C. ELEGANS:185789_AT
agcggtgttcaaagcggagattccacgtggaaacacgcaattttaccgtgtgctgtattc
tggtcaaattgatgcaattgataatgaagttgaccggaagcattatgagctaaaaattat
gagtcaaggactgaacgagtacttctggaaggagaagagctgtaagttctactggcaatc
tgtatttggaaatgccccagtattgattattggctcccgatctggacaatattcaaccca
gacaacaaataattaccctccatactctttatacaaggttgaagagctcaaacgagacag
aattccgtctatggctgccaggtgtaggaaaattccaggtcgatttggtccagcaccacc
atggaaaatttcggaaggagaagataatgcgctttattttcttgatttggttaaagataa
tgttattaatgatggagactgtttttctttcacgagaaccgatgaaaaccctgattggga
tgtcaaaagagacgaggaatctgctgctca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCGGTGTTCAAAGCGGAGATTCCA 545 79 450 Antisense
TTACCGTGTGCTGTATTCTGGTCAA 185 683 492 Antisense
GAGCTGTAAGTTCTACTGGCAATCT 377 387 606 Antisense
GCCCCAGTATTGATTATTGGCTCCC 428 283 643 Antisense
ATTGGCTCCCGATCTGGACAATATT 519 3 658 Antisense
GGACAATATTCAACCCAGACAACAA 106 527 673 Antisense
ACAAATAATTACCCTCCATACTCTT 501 111 694 Antisense
ATTCCGTCTATGGCTGCCAGGTGTA 638 5 751 Antisense
ATTCCAGGTCGATTTGGTCCAGCAC 658 7 781 Antisense
ATGCGCTTTATTTTCTTGATTTGGT 331 41 836 Antisense
AAAGAGACGAGGAATCTGCTGCTCA 584 121 935 Antisense
Sequence Source Affymetrix Proprietary Database