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[185788_s_at]

Description T24A11.1B /REP_DB=WormBase Gene ID /WP=CE28087 /TR=Q9U360 /GB=CAB61017.2 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 59      4grp_total > 12      6grp_cgc > 28      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 31
(-1.3)
A 		27.2
(-1.6)
A 		11.6
(-3)
A 		80.7
(3)
A 		69
B 36.6
(1.3)
A 		16.2
(-3)
A 		30.7
(0.1)
A 		44.7
(3)
P 		29
C 41.1
(-0.7)
P 		49.9
(1)
A 		29.5
(-3)
P 		59.8
(3)
A 		30
avr 36.2
(-1) 		31.1
(-1.9) 		23.9
(-3) 		61.7
(3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 82
1 2 3 4 5 6 range
A 62.3
(1.5)
P 		25.7
(-1.2)
A 		1.1
(-3)
A 		47.3
(0.4)
A 		31.4
(-0.8)
A 		82.6
(3)
P 		82
B 29.7
(0.3)
A 		19
(-1.5)
A 		25.8
(-0.4)
P 		10.1
(-3)
A 		29
(0.2)
A 		45.8
(3)
P 		36
C 38.2
(3)
A 		24.9
(0.1)
A 		26.2
(0.4)
A 		10.8
(-3)
A 		15.2
(-2)
A 		32.1
(1.7)
A 		27
avr 43.4
(1.3) 		23.2
(-2.1) 		17.7
(-3) 		22.7
(-2.2) 		25.2
(-1.7) 		53.5
(3) 		36
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 11.3
(2.7)
A 		5.9
(-1)
A 		3
(-3)
A 		11.8
(3)
A 		9
B 11.7
(3)
A 		4
(-3)
A 		7.1
(-0.6)
A 		9.5
(1.3)
P 		8
C 13.6
(2)
P 		14.3
(3)
A 		10.3
(-2.7)
P 		10.1
(-3)
A 		4
avr 12.2
(3) 		8.1
(-1.6) 		6.8
(-3) 		10.5
(1.1) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 11.5
(0.4)
P 		9.1
(-0.3)
A 		0.2
(-3)
A 		12
(0.6)
A 		9.5
(-0.2)
A 		20.1
(3)
P 		20
B 10.3
(0.2)
A 		6.3
(-1.5)
A 		6.3
(-1.5)
P 		2.7
(-3)
A 		11.8
(0.8)
A 		17.1
(3)
P 		14
C 14.2
(3)
A 		7.6
(-0.3)
A 		6.7
(-0.8)
A 		2.2
(-3)
A 		4.9
(-1.7)
A 		10.7
(1.3)
A 		12
avr 12
(0.9) 		7.7
(-1.3) 		4.4
(-3) 		5.6
(-2.4) 		8.7
(-0.8) 		16
(3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185788_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6832
Sequence Type Exemplar sequence
Representative Public ID T24A11.1B NCBI
Target Description T24A11.1B /REP_DB=WormBase Gene ID /WP=CE28087 /TR=Q9U360 /GB=CAB61017.2 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065365(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065365 NCBI Caenorhabditis elegans MTM (myotubularin) family member (mtm-3) (mtm-3) mRNA, complete cds. 11/11 A 
GENEFINDER00000027685 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:3788519:3796586:-1 10/11 None
SNAP00000027676 ENSEMBL cdna:SNAP chromosome:CEL140:III:3791238:3796705:-1 10/11 None
T24A11.1b ENSEMBL cdna:known chromosome:CEL140:III:3789962:3800412:-1 gene:T24A11.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
175490 2 1 NM_065365 185788_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:3791237-3800015(-) 100.0 100.0
Public Domain and Genome References
Ensembl T24A11.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB61017 Hypothetical protein T24A11.1b [Caenorhabditis elegans] ref|NP_497766.2| MTM (myotubularin) family member (mtm-3) [Caenorhabditis elegans] 0.0
blast AAC78763 myotubularin homologous protein 1 [Caenorhabditis elegans] 0.0
blast CAA88884 Hypothetical protein T24A11.1a [Caenorhabditis elegans] ref|NP_001022794.1| MTM (myotubularin) family member (mtm-3) [Caenorhabditis elegans] sp|Q22712|YW91_CAEEL Hypothetical protein T24A11.1 in chromosome III 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR010569 EMBL-EBI Myotubularin-related 1.2E-64
Pfam IPR000306 EMBL-EBI Zn-finger, FYVE type 1.8E-25
Pfam IPR010569 EMBL-EBI Myotubularin-related 1.2E-64
Pfam IPR000306 EMBL-EBI Zn-finger, FYVE type 1.8E-25
Pfam IPR010569 EMBL-EBI Myotubularin-related 1.2E-64
Pfam IPR000306 EMBL-EBI Zn-finger, FYVE type 1.8E-25
Sequence
Target Sequence 
>C. ELEGANS:185788_S_AT
tgaagcttagcagcagttcaacaacaactacaagttcaagcacaaaaattgaaaacgatt
cgaacgttccaggacttgataataattctgataatgtttctgaaaatgtatccgaaaacg
ctattcctgatataatagttgaagaaaaagaggcagaagacccaataaaagaggcggaaa
gcccatcaaaagagactaaatgtccaaaaacacttcgaaatttcatttcattttctccaa
aaagttctatgagaaagaacaaagttcattctcgtgatccattgaaatcaattgacgagg
gttcaagttctcagcaagcagagtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAAGCTTAGCAGCAGTTCAACAAC 176 575 2672 Antisense
ACGATTCGAACGTTCCAGGACTTGA 654 91 2726 Antisense
ACGTTCCAGGACTTGATAATAATTC 341 93 2735 Antisense
TGTATCCGAAAACGCTATTCCTGAT 175 561 2778 Antisense
GGCAGAAGACCCAATAAAAGAGGCG 483 525 2823 Antisense
GGCGGAAAGCCCATCAAAAGAGACT 276 539 2844 Antisense
GACTAAATGTCCAAAAACACTTCGA 676 369 2865 Antisense
AACACTTCGAAATTTCATTTCATTT 519 135 2880 Antisense
GAACAAAGTTCATTCTCGTGATCCA 115 353 2928 Antisense
TGACGAGGGTTCAAGTTCTCAGCAA 232 571 2964 Antisense
GTTCAAGTTCTCAGCAAGCAGAGTC 179 445 2972 Antisense
Sequence Source Affymetrix Proprietary Database