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[185787_s_at]

Description T05B11.3 /REP_DB=WormBase Gene ID /WP=CE13219 /TR=P90961 /GB=AAB37069.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 18      6grp_high1_10_10 > 70      4grp_highest_8_8 > 13      4grp_high_8_8 > 23      6grp_highest_nonorm > 56      6grp_total > 81      4grp_total > 16      6grp_highest_sub > 04_05      6grp_cgc > 85      6grp_high1_sub > 04      6grp_cgc_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2644
1 2 3 4 range
A 1657.5
(-3)
P 		1927.4
(-2.1)
P 		2701.1
(0.5)
P 		3425.8
(3)
P 		1768
B 1470.8
(-3)
P 		2346.7
(-0.4)
P 		2636.6
(0.5)
P 		3463.5
(3)
P 		1993
C 1961.8
(-3)
P 		2433.9
(-1.7)
P 		2617.3
(-1.2)
P 		4114.8
(3)
P 		2153
avr 1696.7
(-3) 		2236
(-1.4) 		2651.7
(-0.1) 		3668
(3) 		1971

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 815
1 2 3 4 5 6 range
A 1690.2
(-2.7)
P 		1967.1
(-0.3)
P 		1658.2
(-3)
P 		2353.7
(3)
P 		2280.4
(2.4)
P 		1760.2
(-2.1)
P 		696
B 1678.6
(-0.8)
P 		1922
(3)
P 		1745.3
(0.2)
P 		1880.6
(2.4)
P 		1602
(-2)
P 		1538.9
(-3)
P 		383
C 1956.5
(1.8)
P 		1592.6
(-3)
P 		2049
(3)
P 		2052.1
(3)
P 		1819.3
(-0)
P 		1605.6
(-2.8)
P 		460
avr 1775.1
(-1.2) 		1827.2
(-0.5) 		1817.5
(-0.6) 		2095.5
(3) 		1900.6
(0.5) 		1634.9
(-3) 		461
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 494
1 2 3 4 range
A 603.5
(0.9)
P 		418.4
(-3)
P 		706.1
(3)
P 		501.5
(-1.3)
P 		288
B 469
(-3)
P 		579.6
(-0.5)
P 		611
(0.2)
P 		738.1
(3)
P 		269
C 649.4
(-3)
P 		699.7
(-1.9)
P 		912.2
(3)
P 		693.8
(-2)
P 		263
avr 574
(-2.7) 		565.9
(-3) 		743.1
(3) 		644.5
(-0.3) 		177

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 414
1 2 3 4 5 6 range
A 311.6
(-3)
P 		699.6
(3)
P 		361.1
(-2.2)
P 		596.9
(1.4)
P 		688.1
(2.8)
P 		428.6
(-1.2)
P 		388
B 584.1
(1.2)
P 		639.8
(2.7)
P 		423.8
(-3)
P 		498.1
(-1)
P 		650.9
(3)
P 		573.8
(1)
P 		227
C 725.2
(3)
P 		485.9
(-1.6)
P 		521.5
(-0.9)
P 		412.7
(-3)
P 		588.7
(0.4)
P 		537.5
(-0.6)
P 		313
avr 540.3
(0) 		608.4
(2) 		435.5
(-3) 		502.6
(-1.1) 		642.6
(3) 		513.3
(-0.7) 		207
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185787_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11259
Sequence Type Exemplar sequence
Representative Public ID T05B11.3 NCBI
Target Description T05B11.3 /REP_DB=WormBase Gene ID /WP=CE13219 /TR=P90961 /GB=AAB37069.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072598(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072598 NCBI Caenorhabditis elegans Clathrin LIght Chain family member (clic-1) (clic-1) mRNA, complete cds. 11/11 A 
SNAP00000037441 ENSEMBL cdna:SNAP chromosome:CEL140:V:7736528:7737477:-1 11/11 None
GENEFINDER00000037447 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7736528:7737477:-1 11/11 None
T05B11.3.1 ENSEMBL cdna:known chromosome:CEL140:V:7736214:7737613:-1 gene:T05B11.3 11/11 A 
T05B11.3.2 ENSEMBL cdna:known chromosome:CEL140:V:7736215:7737505:-1 gene:T05B11.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7736528-7737478(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol clic-1
Ensembl T05B11.3
Entrez Gene 179150 Entrez gene
SwissProt P90961 EMBL-EBI
WormBase CE13219 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504999 Clathrin LIght Chain family member (clic-1) [Caenorhabditis elegans] gb|AAB37069.1| Clathrin light chain protein 1 [Caenorhabditis elegans] 2.0E-71
blast CAE73198 Hypothetical protein CBG20601 [Caenorhabditis briggsae] 6.0E-62
Sequence
Target Sequence 
>C. ELEGANS:185787_S_AT
gctgcagcagctaatccagatgcgccagaagccgatgctccagctccagctcttgatgat
gactttggagacctccagattgctggtgacgagccaccaccggttgtgcatccaactgat
tccggagtcgatttggatggacttgtcgacgacaatgctgccgcaccagcaatcgttgtt
cctgccgtagaaccaatggtgaatggaaatcattctgcttcttccggaggttctaaaggt
ccatcaccaattctctcaactgtcccaagaattgaggctgaaaaaattcgactgtggaaa
gctcagcaagagcaacttctttcgaaaaaagatgaagctgaagaaaagaaaaagattgaa
cttcgtgcaaatgccaagaaggagcttgaagagtggtataaacaacgcgagaagaccctt
caattgtcacatgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTGCAGCAGCTAATCCAGATGCGC 188 297 88 Antisense
TCCAGATGCGCCAGAAGCCGATGCT 678 589 102 Antisense
CCAGCTCCAGCTCTTGATGATGACT 354 273 127 Antisense
GGAGACCTCCAGATTGCTGGTGACG 259 519 154 Antisense
ACCGGTTGTGCATCCAACTGATTCC 167 87 186 Antisense
ACTTGTCGACGACAATGCTGCCGCA 545 101 228 Antisense
AATCGTTGTTCCTGCCGTAGAACCA 223 61 258 Antisense
TGGAAATCATTCTGCTTCTTCCGGA 298 547 291 Antisense
GGAGGTTCTAAAGGTCCATCACCAA 110 517 313 Antisense
CAATTCTCTCAACTGTCCCAAGAAT 140 181 335 Antisense
GAAGACCCTTCAATTGTCACATGAC 624 339 498 Antisense
Sequence Source Affymetrix Proprietary Database