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[185785_at]

Description K09D9.12 /REP_DB=WormBase Gene ID /WP=CE21066 /TR=Q9N5I8 /GB=AAF39930.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 39      4grp_total > 25      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 5.1
(-1.6)
A 		4.1
(-3)
A 		6.6
(0.4)
A 		8.5
(3)
A 		4
B 4
(-1.6)
A 		6
(3)
A 		4.6
(-0.2)
A 		3.4
(-3)
A 		3
C 4.2
(-1.3)
A 		5.9
(3)
A 		3.5
(-3)
A 		5.7
(2.5)
A 		2
avr 4.4
(-3) 		5.3
(0.6) 		4.9
(-1) 		5.9
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 4.5
(-0.6)
A 		3
(-3)
A 		4.7
(-0.3)
A 		6.7
(2.8)
A 		6.5
(2.5)
A 		6.8
(3)
A 		4
B 2.6
(-2.1)
A 		5
(2)
A 		2.1
(-3)
A 		4.5
(1.1)
A 		2.4
(-2.5)
A 		5.6
(3)
A 		4
C 16.2
(3)
A 		8.4
(-0.9)
A 		4.2
(-3)
A 		4.1
(-3)
A 		8.9
(-0.6)
A 		8
(-1.1)
A 		12
avr 7.8
(3) 		5.5
(-0.4) 		3.7
(-3) 		5.1
(-1) 		5.9
(0.2) 		6.8
(1.5) 		4
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1
1 2 3 4 range
A 1.9
(3)
A 		0.9
(-3)
A 		1.7
(1.8)
A 		1.2
(-1.2)
A 		1
B 1.3
(1.5)
A 		1.5
(3)
A 		1.1
(0)
A 		0.7
(-3)
A 		1
C 1.4
(0.4)
A 		1.7
(3)
A 		1.2
(-1.3)
A 		1
(-3)
A 		1
avr 1.5
(3) 		1.4
(1.8) 		1.3
(0.6) 		1
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 0.8
(-3)
A 		1.1
(-1.5)
A 		1
(-2)
A 		1.7
(1.5)
A 		2
(3)
A 		1.7
(1.5)
A 		1
B 0.9
(-1.5)
A 		1.7
(1.5)
A 		0.5
(-3)
A 		1.2
(-0.4)
A 		1
(-1.1)
A 		2.1
(3)
A 		2
C 6
(3)
A 		2.6
(-0.9)
A 		1.1
(-2.7)
A 		0.8
(-3)
A 		2.9
(-0.6)
A 		2.7
(-0.8)
A 		5
avr 2.6
(3) 		1.8
(0.2) 		0.9
(-3) 		1.2
(-1.9) 		2
(0.9) 		2.2
(1.6) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185785_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15574
Sequence Type Exemplar sequence
Representative Public ID K09D9.12 NCBI
Target Description K09D9.12 /REP_DB=WormBase Gene ID /WP=CE21066 /TR=Q9N5I8 /GB=AAF39930.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071715(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071715 NCBI Caenorhabditis elegans K09D9.12 (K09D9.12) mRNA, complete cds. 11/11 None
SNAP00000015706 ENSEMBL cdna:SNAP chromosome:CEL140:V:4001877:4004038:-1 10/11 None
GENEFINDER00000015712 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4002140:4004996:-1 11/11 None
K09D9.12 ENSEMBL cdna:known chromosome:CEL140:V:4002140:4004996:-1 gene:K09D9.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4002139-4004996(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K09D9.12
Entrez Gene 187214 Entrez gene
SwissProt Q9N5I8 EMBL-EBI
WormBase CE21066 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF39930 Hypothetical protein K09D9.12 [Caenorhabditis elegans] ref|NP_504116.1| K09D9.12 [Caenorhabditis elegans] 0.0
blast CAB02964 Hypothetical protein F16B12.6 [Caenorhabditis elegans] ref|NP_510349.2| F16B12.6 [Caenorhabditis elegans] 8.0E-67
blast CAB02964 Hypothetical protein F16B12.6 [Caenorhabditis elegans] ref|NP_510349.2| F16B12.6 [Caenorhabditis elegans] 9.0E-67
blast CAB02964 Hypothetical protein F16B12.6 [Caenorhabditis elegans] ref|NP_510349.2| F16B12.6 [Caenorhabditis elegans] 1.0E-62
blast CAE60312 Hypothetical protein CBG03903 [Caenorhabditis briggsae] 2.0E-48
Sequence
Target Sequence 
>C. ELEGANS:185785_AT
tcgttcgttcaaattgccaccacaagttgcagtcgatggaacattttatatgcaacttga
tgacttgacgttttggaacgactgtaatcgtcaactgtattacctagtaaatcgatccga
tttgattgaagaatttggatgtatgaacagcaaagtacctgttctaccacccttcacaac
tgcaaaaggagtgtttgtcttctttgtcaacggcggagaagtggacttccgactactgat
gacggatgacttgggtccctgggatgagaactcctcatcgaaacctcgtgaatcagcagg
agagaagtcgtcagtcgttccacttgtttacagttgtcagaatcagctgcgagtcgtcac
aggaaacaaccagtctatgaaatcggttgaatttaaattaagaacgtgtactgcagtttc
atcccggtgtttgcgtcttcaaaaaaaagttgcttacgtggaacgtggcggtcaccagtt
tggacatggaattattatttaccggtttactgaacctggaccaactccagaaccgtgtga
aaggaaatataaaatgtcaacggatatttggttcgatcacctccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGTTCGTTCAAATTGCCACCACAA 607 603 924 Antisense
AGTGTTTGTCTTCTTTGTCAACGGC 197 59 1113 Antisense
AAGTGGACTTCCGACTACTGATGAC 231 159 1142 Antisense
TGGGTCCCTGGGATGAGAACTCCTC 479 543 1175 Antisense
AACTCCTCATCGAAACCTCGTGAAT 7 143 1192 Antisense
GGAGAGAAGTCGTCAGTCGTTCCAC 29 519 1222 Antisense
GTCGTTCCACTTGTTTACAGTTGTC 54 471 1237 Antisense
GAATCAGCTGCGAGTCGTCACAGGA 26 329 1263 Antisense
AGAACGTGTACTGCAGTTTCATCCC 688 73 1324 Antisense
GACCAACTCCAGAACCGTGTGAAAG 28 383 1442 Antisense
CGGATATTTGGTTCGATCACCTCCC 645 241 1484 Antisense
Sequence Source Affymetrix Proprietary Database