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[185783_at]

Description C47E12.11 /REP_DB=WormBase Gene ID /WP=CE05455 /TR=Q18682 /GB=CAA93109.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 97      4grp_total > 32      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 34.3
(1.1)
A 		33.6
(1)
A 		46.8
(3)
A 		8.1
(-3)
A 		39
B 5.3
(-3)
A 		46.4
(3)
A 		41
(2.2)
A 		33.7
(1.1)
A 		41
C 4.9
(-3)
A 		30.6
(-1.1)
A 		39.7
(-0.4)
A 		86.4
(3)
A 		82
avr 14.8
(-3) 		36.9
(1.8) 		42.5
(3) 		42.7
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 92
1 2 3 4 5 6 range
A 24
(-3)
A 		36.3
(-1.9)
A 		29.7
(-2.5)
A 		35.4
(-1.9)
A 		68.6
(1.2)
P 		88.4
(3)
P 		64
B 20.9
(-3)
A 		27.9
(-2.3)
A 		62.5
(0.9)
A 		55.3
(0.2)
A 		60.8
(0.7)
P 		85.3
(3)
P 		64
C 6.6
(-3)
A 		35.2
(-1.1)
A 		9
(-2.8)
A 		23.7
(-1.9)
A 		98.2
(3)
P 		97.8
(3)
P 		92
avr 17.2
(-3) 		33.1
(-1.7) 		33.7
(-1.6) 		38.1
(-1.3) 		75.9
(1.8) 		90.5
(3) 		73
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 12.5
(3)
A 		7.3
(0.2)
A 		12.2
(2.8)
A 		1.2
(-3)
A 		11
B 1.7
(-3)
A 		11.5
(3)
A 		9.5
(1.8)
A 		7.2
(0.4)
A 		10
C 1.6
(-3)
A 		8.8
(0.3)
A 		13.8
(2.6)
A 		14.6
(3)
A 		13
avr 5.3
(-3) 		9.2
(0.6) 		11.8
(3) 		7.7
(-0.8) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 4.4
(-3)
A 		12.9
(-0)
A 		6.5
(-2.3)
A 		9
(-1.4)
A 		20.7
(2.7)
P 		21.5
(3)
P 		17
B 7.3
(-3)
A 		9.3
(-2.5)
A 		15.2
(-1.1)
A 		14.7
(-1.2)
A 		24.7
(1.3)
P 		31.8
(3)
P 		25
C 2.4
(-3)
A 		10.8
(-1.3)
A 		2.3
(-3)
A 		4.8
(-2.5)
A 		31.8
(2.8)
P 		32.8
(3)
P 		31
avr 4.7
(-3) 		11
(-1.4) 		8
(-2.2) 		9.5
(-1.8) 		25.7
(2.3) 		28.7
(3) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185783_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8714
Sequence Type Exemplar sequence
Representative Public ID C47E12.11 NCBI
Target Description C47E12.11 /REP_DB=WormBase Gene ID /WP=CE05455 /TR=Q18682 /GB=CAA93109.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069393(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069393 NCBI Caenorhabditis elegans C47E12.11 (C47E12.11) mRNA, complete cds. 11/11 None
SNAP00000021561 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9969869:9971172:1 11/11 None
GENEFINDER00000021592 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9969618:9971172:1 11/11 None
C47E12.11 ENSEMBL cdna:known chromosome:CEL140:IV:9969869:9971172:1 gene:C47E12.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9969874-9971178(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C47E12.11
Entrez Gene 183557 Entrez gene
SwissProt Q18682 EMBL-EBI
WormBase CE05455 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93109 Hypothetical protein C47E12.11 [Caenorhabditis elegans] ref|NP_501794.1| C47E12.11 [Caenorhabditis elegans] 1.0E-126
blast CAB04050 Hypothetical protein F02E9.3 [Caenorhabditis elegans] ref|NP_492279.2| F02E9.3 [Caenorhabditis elegans] 1.0E-32
blast CAB04050 Hypothetical protein F02E9.3 [Caenorhabditis elegans] ref|NP_492279.2| F02E9.3 [Caenorhabditis elegans] 2.0E-32
blast CAE67270 Hypothetical protein CBG12718 [Caenorhabditis briggsae] 1.0E-12
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000021592 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:185783_AT
atacgattgccgtggaatttctatgatcaatccagttgctcaaactcctttcccaaatgc
ttgttcagtggaaactagacaaagagcaagagaaaaaatgaaagctttagctaaacgagg
aatggattctaacgatcttgcctcgtccacatcttcaaaacattcgaccaagaagactaa
cacaagcgacagctattctgatgatatgtcacctgtctttttgacacgtgtcagttctga
tactcgttttcctggtgccacgtctccagctacttgtgaaagagttcgtttaatgctcaa
agaatacgcattgagagaacatataaaagactcggattatactggaagccattctaaaaa
ttcgaaaagctcaaagaagaagaatacacaaacggactcaaagagcacaaaatccaagtc
tttaagtatgaaaactacgtactcagagagttcacagcttcgagacagtgattcgtgcag
c

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATACGATTGCCGTGGAATTTCTATG 616 23 561 Antisense
CAATCCAGTTGCTCAAACTCCTTTC 128 183 588 Antisense
TGGATTCTAACGATCTTGCCTCGTC 356 549 683 Antisense
GAAGACTAACACAAGCGACAGCTAT 701 339 732 Antisense
ATTCTGATGATATGTCACCTGTCTT 653 9 755 Antisense
GTCACCTGTCTTTTTGACACGTGTC 695 465 768 Antisense
GTCAGTTCTGATACTCGTTTTCCTG 168 467 790 Antisense
CCACGTCTCCAGCTACTTGTGAAAG 33 275 818 Antisense
GACTCGGATTATACTGGAAGCCATT 204 375 889 Antisense
TCAGAGAGTTCACAGCTTCGAGACA 12 625 1003 Antisense
GCTTCGAGACAGTGATTCGTGCAGC 39 307 1017 Antisense
Sequence Source Affymetrix Proprietary Database