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[185782_at]

Description T03G11.3 /REP_DB=WormBase Gene ID /WP=CE04871 /TR=Q22122 /GB=AAA82448.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 27      4grp_total > 21      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 168
1 2 3 4 range
A 133.5
(0.6)
P 		34.3
(-3)
A 		36.9
(-2.9)
A 		201.9
(3)
A 		168
B 140.7
(3)
M 		70.1
(-1.6)
A 		48.7
(-3)
A 		103.1
(0.5)
P 		92
C 129.6
(1.1)
A 		99.5
(-0.4)
A 		45.1
(-3)
A 		169.3
(3)
A 		124
avr 134.6
(1.8) 		68
(-1.7) 		43.6
(-3) 		158.1
(3) 		115

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 108
1 2 3 4 5 6 range
A 125.2
(3)
M 		80
(0.3)
A 		69.2
(-0.4)
A 		25.6
(-3)
A 		64.4
(-0.7)
A 		76.5
(0.1)
A 		100
B 110.8
(3)
A 		71.2
(0.2)
A 		26.8
(-3)
A 		43.8
(-1.8)
A 		38.3
(-2.2)
A 		58.5
(-0.7)
A 		84
C 117.7
(3)
A 		93.3
(1.5)
A 		57.5
(-0.6)
A 		17
(-3)
A 		19.2
(-2.9)
A 		54.3
(-0.8)
A 		101
avr 117.9
(3) 		81.5
(0.5) 		51.2
(-1.5) 		28.8
(-3) 		40.6
(-2.2) 		63.1
(-0.7) 		89
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 48.6
(3)
P 		7.4
(-3)
A 		9.6
(-2.7)
A 		29.6
(0.2)
A 		41
B 44.9
(3)
M 		17.3
(-1.9)
A 		11.3
(-3)
A 		22
(-1.1)
P 		34
C 42.9
(3)
A 		28.6
(-0.2)
A 		15.7
(-3)
A 		28.5
(-0.2)
A 		27
avr 45.5
(3) 		17.8
(-2) 		12.2
(-3) 		26.7
(-0.4) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 23.1
(1.5)
M 		28.4
(3)
A 		15.1
(-0.6)
A 		6.5
(-3)
A 		19.4
(0.5)
A 		18.6
(0.3)
A 		22
B 38.6
(3)
A 		23.7
(0.2)
A 		6.5
(-3)
A 		11.6
(-2)
A 		15.6
(-1.3)
A 		21.8
(-0.1)
A 		32
C 43.6
(3)
A 		28.5
(0.7)
A 		14.6
(-1.3)
A 		3.4
(-3)
A 		6.2
(-2.6)
A 		18.2
(-0.8)
A 		40
avr 35.1
(3) 		26.9
(1.2) 		12.1
(-1.9) 		7.2
(-3) 		13.7
(-1.6) 		19.5
(-0.4) 		28
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185782_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17044
Sequence Type Exemplar sequence
Representative Public ID T03G11.3 NCBI
Target Description T03G11.3 /REP_DB=WormBase Gene ID /WP=CE04871 /TR=Q22122 /GB=AAA82448.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076478(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076478 NCBI Caenorhabditis elegans T03G11.3 (T03G11.3) mRNA, complete cds. 11/11 None
GENEFINDER00000028938 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:5173970:5177397:1 11/11 None
T03G11.3 ENSEMBL cdna:known chromosome:CEL140:X:5173970:5177397:1 gene:T03G11.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000028926 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5173970-5177398(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T03G11.3
Entrez Gene 188032 Entrez gene
SwissProt Q22122 EMBL-EBI
WormBase CE04871 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CHICKEN:GGA.16618.1.S1_AT similar to RIKEN cDNA 3110050N22 gga
MOE430B:1454181_AT RIKEN cDNA 4930519B02 gene mm
MOUSE430_2:1454181_AT RIKEN cDNA 4930519B02 gene mm
MG-U74BV2:105284_AT PREDICTED: hypothetical protein LOC75122 [Mus musculus], mRNA sequence mm
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_508879 T03G11.3 [Caenorhabditis elegans] gb|AAA82448.1| Hypothetical protein T03G11.3 [Caenorhabditis elegans] 1.0E-174
blast NP_508879 T03G11.3 [Caenorhabditis elegans] gb|AAA82448.1| Hypothetical protein T03G11.3 [Caenorhabditis elegans] 1.0E-160
blast CAE68705 Hypothetical protein CBG14627 [Caenorhabditis briggsae] 1.0E-113
blast CAE68705 Hypothetical protein CBG14627 [Caenorhabditis briggsae] 1.0E-110
blast AAH55250 Unknown (protein for MGC:63810) [Danio rerio] ref|NP_955974.1| hypothetical protein LOC324412 [Danio rerio] 8.0E-24
blast AAH55250 Unknown (protein for MGC:63810) [Danio rerio] ref|NP_955974.1| hypothetical protein LOC324412 [Danio rerio] 3.0E-23
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508879.1 1 283-305
T03G11.3 1 283-305
GENEFINDER00000028938 1 266-288
Sequence
Target Sequence 
>C. ELEGANS:185782_AT
aaatcctctggcggaaatcgcgcgctcaccggcaactacagaagcacgccttcgaaaaat
gaagtgcgcgctctagaatttatggcaattttcttttcctttttttggtttcagggaaaa
aaacaagagtcgtcaagtagaaacggatctgcagagcggaaaccaaccacaagaggaaga
gatggaagtcttttaagggctcgtcgagatgattcaaacgacatcacttcaagaaggaag
tctctggacactagaacttctttaacaactggtcaagcttccaaccggcacacgtcactt
tcggcaggaatgcgcccaacacttcctcccatgactccttctagcaattcccctcattat
cccatcccattgtttaattgcctaatttttatctctctgcttgtatattttttcaatggt
tcaagagcgtcgactacaacaacagcgagtcgtagtggttcgagaacatcttccagagct
tgtccgcgtgacgattcccgcgactcccgtctctctcaagccaaaaacaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATCCTCTGGCGGAAATCGCGCGC 701 117 505 Antisense
CTCACCGGCAACTACAGAAGCACGC 352 227 529 Antisense
GGATCTGCAGAGCGGAAACCAACCA 105 513 649 Antisense
GGAAGTCTTTTAAGGGCTCGTCGAG 152 531 688 Antisense
AACAACTGGTCAAGCTTCCAACCGG 23 133 768 Antisense
GTCACTTTCGGCAGGAATGCGCCCA 317 463 798 Antisense
ATCCCATCCCATTGTTTAATTGCCT 73 39 863 Antisense
TTGCCTAATTTTTATCTCTCTGCTT 377 701 882 Antisense
AAGAGCGTCGACTACAACAACAGCG 387 153 927 Antisense
CGAGAACATCTTCCAGAGCTTGTCC 249 251 965 Antisense
CCGTCTCTCTCAAGCCAAAAACAAC 457 265 1011 Antisense
Sequence Source Affymetrix Proprietary Database