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[185781_at]

Description C05E11.2 /REP_DB=WormBase Gene ID /WP=CE03932 /TR=Q17666 /GB=AAA96194.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 75      4grp_total > 10      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 111
1 2 3 4 range
A 10.5
(-2.8)
A 		7.4
(-3)
A 		22.8
(-2.1)
A 		113.1
(3)
P 		106
B 5.3
(-2.6)
A 		31.1
(0.8)
A 		2.5
(-3)
A 		48.1
(3)
A 		46
C 4.6
(-3)
A 		5.4
(-2.9)
A 		5.2
(-3)
A 		86.1
(3)
A 		82
avr 6.8
(-3) 		14.6
(-2.4) 		10.2
(-2.7) 		82.4
(3) 		76

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 5
(-3)
A 		17.6
(-1.4)
A 		18.9
(-1.3)
A 		35.9
(0.8)
A 		16.6
(-1.6)
A 		53.5
(3)
A 		49
B 5
(2.7)
A 		4.8
(2.3)
A 		2.1
(-2.3)
A 		3.5
(0.1)
A 		5.2
(3)
A 		1.7
(-3)
A 		4
C 1.5
(-2.9)
A 		30.4
(3)
A 		3.4
(-2.5)
A 		17.8
(0.4)
A 		1.2
(-3)
A 		10.4
(-1.1)
A 		29
avr 3.8
(-3) 		17.6
(1.6) 		8.1
(-1.6) 		19.1
(2.1) 		7.7
(-1.7) 		21.9
(3) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 3.8
(-2.1)
A 		1.6
(-3)
A 		6
(-1.2)
A 		16.6
(3)
P 		15
B 1.7
(-2.3)
A 		7.7
(1.4)
A 		0.6
(-3)
A 		10.2
(3)
A 		10
C 1.5
(-3)
A 		1.5
(-3)
A 		1.8
(-2.9)
A 		14.5
(3)
A 		13
avr 2.3
(-3) 		3.6
(-2.3) 		2.8
(-2.7) 		13.8
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 0.9
(-3)
A 		6.3
(-0.3)
A 		4.1
(-1.4)
A 		9.1
(1.1)
A 		5
(-1)
A 		13
(3)
A 		12
B 1.7
(1.5)
A 		1.6
(1.1)
A 		0.5
(-3)
A 		0.9
(-1.5)
A 		2.1
(3)
A 		0.6
(-2.6)
A 		2
C 0.5
(-2.9)
A 		9.3
(3)
A 		0.9
(-2.7)
A 		3.6
(-0.8)
A 		0.4
(-3)
A 		3.5
(-0.9)
A 		9
avr 1
(-3) 		5.7
(3) 		1.8
(-2) 		4.5
(1.5) 		2.5
(-1.1) 		5.7
(3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185781_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16241
Sequence Type Exemplar sequence
Representative Public ID C05E11.2 NCBI
Target Description C05E11.2 /REP_DB=WormBase Gene ID /WP=CE03932 /TR=Q17666 /GB=AAA96194.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076386(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076386 NCBI Caenorhabditis elegans C05E11.2 (C05E11.2) mRNA, complete cds. 11/11 None
GENEFINDER00000025336 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:4586887:4587963:1 11/11 None
C05E11.2 ENSEMBL cdna:known chromosome:CEL140:X:4586887:4587963:1 gene:C05E11.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4586887-4587964(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C05E11.2
Entrez Gene 182272 Entrez gene
SwissProt Q17666 EMBL-EBI
WormBase CE03932 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA96194 Hypothetical protein C05E11.2 [Caenorhabditis elegans] ref|NP_508787.1| C05E11.2 [Caenorhabditis elegans] 2.0E-78
blast CAE68617 Hypothetical protein CBG14499 [Caenorhabditis briggsae] 1.0E-17
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508787.1 2 71-93,103-125
C05E11.2 2 71-93,103-125
GENEFINDER00000025336 2 71-93,103-125
Sequence
Target Sequence 
>C. ELEGANS:185781_AT
ttattgtttgcccttgtaagccgtcctgaagcttcacctgaaacgcgatttgttgtggga
gtcatcgtgttgttaaaaatccgatggctcatcaaacgaactttccttgctagaaaacga
ggagttgtggtttgctacgtaatgtttccaggtcaaacttttttgaacacggcagcgagt
acaatccgatatgtcacatttatgattaaatgtttccttattttaatatattcttgtatc
attgtctacctgtccgacaaccctgctaacagaaacaccgttgcagtgtacacattgatt
tttgttctaatccattgttgggagcaattcttgtatggcttctacaaagtcggcgtttcg
t

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTATTGTTTGCCCTTGTAAGCCGTC 612 673 40 Antisense
TTGTAAGCCGTCCTGAAGCTTCACC 439 701 53 Antisense
AGCTTCACCTGAAACGCGATTTGTT 609 77 69 Antisense
GTTGTGGGAGTCATCGTGTTGTTAA 20 437 91 Antisense
ATCAAACGAACTTTCCTTGCTAGAA 12 27 130 Antisense
GTTTGCTACGTAATGTTTCCAGGTC 109 451 169 Antisense
GGCAGCGAGTACAATCCGATATGTC 629 535 210 Antisense
TTGTATCATTGTCTACCTGTCCGAC 366 703 273 Antisense
GTCCGACAACCCTGCTAACAGAAAC 250 469 291 Antisense
GGAGCAATTCTTGTATGGCTTCTAC 652 519 360 Antisense
GGCTTCTACAAAGTCGGCGTTTCGT 193 535 376 Antisense
Sequence Source Affymetrix Proprietary Database