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[185779_at]

Description T05B11.4 /REP_DB=WormBase Gene ID /WP=CE07467 /TR=Q22213 /GB=AAB37068.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 94      4grp_total > 60      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 106
1 2 3 4 range
A 86.6
(1.8)
A 		67.6
(0.7)
A 		108.4
(3)
A 		2
(-3)
A 		106
B 50.1
(1)
A 		70.9
(3)
A 		61.1
(2.1)
A 		7.3
(-3)
A 		64
C 58.5
(-0.8)
A 		42
(-3)
A 		86
(3)
A 		58
(-0.8)
A 		44
avr 65.1
(1.1) 		60.2
(0.6) 		85.2
(3) 		22.4
(-3) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 131
1 2 3 4 5 6 range
A 8.6
(-3)
A 		78.3
(1.8)
A 		95.5
(3)
A 		50
(-0.2)
A 		96.2
(3)
P 		82.3
(2)
A 		88
B 88.3
(-0.5)
A 		54.7
(-3)
A 		90.5
(-0.3)
A 		97.7
(0.3)
A 		134
(3)
P 		71.8
(-1.7)
A 		79
C 58
(-2.4)
A 		80.3
(-0.9)
A 		49
(-3)
A 		81.6
(-0.8)
A 		139.8
(3)
A 		91
(-0.2)
P 		91
avr 51.6
(-3) 		71.1
(-1.4) 		78.3
(-0.8) 		76.4
(-0.9) 		123.3
(3) 		81.7
(-0.5) 		72
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 31.5
(3)
A 		14.7
(-0.2)
A 		28.3
(2.4)
A 		0.3
(-3)
A 		31
B 16
(2.4)
A 		17.5
(3)
A 		14.2
(1.8)
A 		1.5
(-3)
A 		16
C 19.4
(-0.1)
A 		12.1
(-2.3)
A 		30
(3)
A 		9.8
(-3)
A 		20
avr 22.3
(2.4) 		14.8
(0.2) 		24.2
(3) 		3.9
(-3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 1.6
(-3)
A 		27.8
(2.7)
A 		20.8
(1.2)
A 		12.7
(-0.6)
A 		29
(3)
P 		20
(1)
A 		27
B 30.7
(-0.9)
A 		18.2
(-3)
A 		22
(-2.4)
A 		25.9
(-1.7)
A 		54.5
(3)
P 		26.8
(-1.6)
A 		36
C 21.5
(-1.3)
A 		24.5
(-0.8)
A 		12.5
(-3)
A 		16.4
(-2.3)
A 		45.2
(3)
A 		30.5
(0.3)
P 		33
avr 17.9
(-3) 		23.5
(-1.7) 		18.4
(-2.9) 		18.3
(-2.9) 		42.9
(3) 		25.8
(-1.1) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185779_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11623
Sequence Type Exemplar sequence
Representative Public ID T05B11.4 NCBI
Target Description T05B11.4 /REP_DB=WormBase Gene ID /WP=CE07467 /TR=Q22213 /GB=AAB37068.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072601(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072601 NCBI Caenorhabditis elegans T05B11.4 (T05B11.4) mRNA, complete cds. 11/11 None
SNAP00000037445 ENSEMBL cdna:SNAP chromosome:CEL140:V:7754536:7756409:-1 11/11 None
GENEFINDER00000037450 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7754536:7756409:-1 11/11 None
T05B11.4 ENSEMBL cdna:known chromosome:CEL140:V:7754536:7756731:-1 gene:T05B11.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7754536-7756732(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T05B11.4
Entrez Gene 188111 Entrez gene
SwissProt Q22213 EMBL-EBI
WormBase CE07467 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_505002 T05B11.4 [Caenorhabditis elegans] gb|AAB37068.1| Hypothetical protein T05B11.4 [Caenorhabditis elegans] 0.0
blast AAC78186 Hypothetical protein F46F5.7 [Caenorhabditis elegans] ref|NP_493820.1| F46F5.7 [Caenorhabditis elegans] 0.0
blast CAE73193 Hypothetical protein CBG20594 [Caenorhabditis briggsae] 1.0E-169
Protein Domains
Database ID Description E-Value
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.0E-126
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505002.1 1 24-43
T05B11.4 1 24-43
SNAP00000037445 1 7-24
GENEFINDER00000037450 1 7-24
Sequence
Target Sequence 
>C. ELEGANS:185779_AT
gatatgcgggctgataaccattggcatatggttaatcttgcggactgcttaatatggtcc
cgcggagagacaaaatggaccatcttcgctgatctagacgaacgaatctacatgacaaac
tatacgggaacaattttggattacgtccaggtcgtcaaaaatgaaagtattgcgagtatt
caattcagacagcaatggataatgaaaactgaactgatgccaccaaaatatgaaggtgat
cgacagttggacaaatggatgccaactcatcgatggcatagttcgagtggaattggtcca
ccgggacatactgcaaaatgtattgttgatacatcgaaagtgttcatcatgtttattcat
tacgtaacacaatttttccctgcgacgaatggttcgaattatgtgcaaattcgtgttgat
ccggaagaaggacttgttagacattaccgtgatctgtctcttggag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATATGCGGGCTGATAACCATTGGC 291 423 838 Antisense
ATATGGTTAATCTTGCGGACTGCTT 386 21 863 Antisense
GGATTACGTCCAGGTCGTCAAAAAT 157 509 975 Antisense
GAAAACTGAACTGATGCCACCAAAA 90 355 1041 Antisense
GAAGGTGATCGACAGTTGGACAAAT 626 333 1069 Antisense
GCCAACTCATCGATGGCATAGTTCG 135 279 1098 Antisense
GTGTTCATCATGTTTATTCATTACG 631 485 1177 Antisense
CACAATTTTTCCCTGCGACGAATGG 3 195 1205 Antisense
GTGCAAATTCGTGTTGATCCGGAAG 623 479 1240 Antisense
GAAGGACTTGTTAGACATTACCGTG 669 331 1264 Antisense
CATTACCGTGATCTGTCTCTTGGAG 16 217 1279 Antisense
Sequence Source Affymetrix Proprietary Database