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[185778_at]

Description H05O09.1 /REP_DB=WormBase Gene ID /WP=CE25927 /TR=O76416 /GB=AAC19224.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 80      4grp_total > 44      6grp_cgc > 95      6grp_cgc_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 32.1
(3)
A 		7.8
(-2.1)
A 		3.5
(-3)
A 		13.3
(-0.9)
A 		29
B 3.8
(-3)
A 		51.2
(3)
A 		6.4
(-2.7)
A 		14.2
(-1.7)
A 		47
C 29.1
(3)
A 		14.4
(-1.9)
A 		18.4
(-0.5)
A 		11
(-3)
A 		18
avr 21.7
(1.9) 		24.5
(3) 		9.4
(-3) 		12.8
(-1.6) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 1.2
(-3)
A 		15.5
(0.5)
A 		5.8
(-1.9)
A 		23.3
(2.4)
A 		25.6
(3)
A 		2.1
(-2.8)
A 		24
B 6.6
(-2)
A 		18.6
(0.5)
A 		1.8
(-3)
A 		30.8
(3)
A 		3.8
(-2.6)
A 		16.1
(-0)
A 		29
C 20.6
(-1.3)
A 		23.8
(-1.1)
A 		7
(-2.6)
A 		69.3
(3)
A 		2.1
(-3)
A 		4.1
(-2.8)
A 		67
avr 9.5
(-2.2) 		19.3
(-0.6) 		4.9
(-3) 		41.1
(3) 		10.5
(-2.1) 		7.4
(-2.6) 		36
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 11.7
(3)
A 		1.7
(-2.6)
A 		0.9
(-3)
A 		1.9
(-2.4)
A 		11
B 1.2
(-3)
A 		12.6
(3)
A 		1.5
(-2.8)
A 		3
(-2.1)
A 		11
C 9.6
(3)
A 		4.2
(-1.2)
A 		6.4
(0.5)
A 		1.9
(-3)
A 		8
avr 7.5
(3) 		6.2
(1.5) 		2.9
(-2.3) 		2.3
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 0.2
(-3)
A 		5.5
(1.2)
A 		1.3
(-2.1)
A 		5.9
(1.6)
A 		7.7
(3)
A 		0.5
(-2.8)
A 		8
B 2.3
(-1.5)
A 		6.2
(1.5)
A 		0.4
(-3)
A 		8.2
(3)
A 		1.5
(-2.2)
A 		6
(1.3)
A 		8
C 7.6
(0.1)
A 		7.3
(-0)
A 		1.8
(-2.5)
A 		13.9
(3)
A 		0.7
(-3)
A 		1.4
(-2.7)
A 		13
avr 3.4
(-1.4) 		6.3
(0.8) 		1.2
(-3) 		9.3
(3) 		3.3
(-1.4) 		2.6
(-2) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185778_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11364
Sequence Type Exemplar sequence
Representative Public ID H05O09.1 NCBI
Target Description H05O09.1 /REP_DB=WormBase Gene ID /WP=CE25927 /TR=O76416 /GB=AAC19224.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029031(11), NM_001029033(11), NM_001029032(11), NM_001029030(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029031 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-58) (tag-58) mRNA, complete cds. 11/11 None
NM_001029033 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-58) (tag-58) mRNA, complete cds. 11/11 None
NM_001029032 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-58) (tag-58) mRNA, complete cds. 11/11 None
NM_001029030 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-58) (tag-58) mRNA, complete cds. 11/11 None
SNAP00000007064 ENSEMBL cdna:SNAP chromosome:CEL140:V:6187384:6198241:-1 11/11 None
GENEFINDER00000007065 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:6187380:6198241:-1 11/11 None
W06H8.8e ENSEMBL cdna:known chromosome:CEL140:V:6123860:6205127:-1 gene:W06H8.8 11/11 A 
W06H8.8g ENSEMBL cdna:known chromosome:CEL140:V:6123881:6205127:-1 gene:W06H8.8 11/11 A 
W06H8.8f ENSEMBL cdna:known chromosome:CEL140:V:6124187:6205127:-1 gene:W06H8.8 11/11 A 
W06H8.8d ENSEMBL cdna:known chromosome:CEL140:V:6164158:6205127:-1 gene:W06H8.8 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
266969 7 4 NM_001029029 183162_at (11)
NM_001029030 176443_s_at (10), 183162_at (11), 185778_at (11)
NM_001029031 174345_at (11), 176443_s_at (10), 183162_at (11), 185778_at (11), 187965_s_at (11), 187994_at (10)
NM_001029032 176443_s_at (10), 183162_at (11), 185778_at (11), 187965_s_at (11), 187994_at (10)
NM_001029033 174345_at (11), 176443_s_at (10), 183162_at (11), 185778_at (11), 187965_s_at (11), 187994_at (10)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6187379-6198596(-) 99.46 100.0
Public Domain and Genome References
Ensembl W06H8.8
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_001024202 Temporarily Assigned Gene name family member (tag-58) [Caenorhabditis elegans] gb|AAN61517.1| 2MDa_1 protein [Caenorhabditis elegans] 0.0
blast NP_001024204 Temporarily Assigned Gene name family member (tag-58) [Caenorhabditis elegans] 0.0
blast NP_001024203 Temporarily Assigned Gene name family member (tag-58) [Caenorhabditis elegans] gb|AAN61518.1| 2MDa_2 protein [Caenorhabditis elegans] 0.0
blast NP_001024201 Temporarily Assigned Gene name family member (tag-58) [Caenorhabditis elegans] gb|AAN61519.1| 1MDa_1 protein [Caenorhabditis elegans] 0.0
Protein Families
Method ID Description E-Value
ec A2S7_HUMAN (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) 1.0E-52
ec A2S7_HUMAN (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) 1.0E-53
hanks 2.1.17 CaMK Group; CaMK I Regulated by Ca2+/CaM and close relatives; TWITCH 3.0E-85
Protein Domains
Database ID Description E-Value
scop a.2.7.Phenylalanyl-tRNA synthetase (PheRS) All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Phenylalanyl-tRNA synthetase (PheRS) 4.30000019073486
scop a.2.7.Phenylalanyl-tRNA synthetase (PheRS) All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Phenylalanyl-tRNA synthetase (PheRS) 4.19999980926514
Pfam IPR003961 EMBL-EBI Fibronectin, type III 9.3E-14
Pfam IPR003961 EMBL-EBI Fibronectin, type III 1.4E-17
Pfam IPR003961 EMBL-EBI Fibronectin, type III 4.3E-16
Pfam IPR003961 EMBL-EBI Fibronectin, type III 1.7E-11
Pfam IPR003961 EMBL-EBI Fibronectin, type III 7.4E-10
Pfam IPR003961 EMBL-EBI Fibronectin, type III 1.0E-14
Pfam IPR003961 EMBL-EBI Fibronectin, type III 7.9E-12
Pfam IPR003961 EMBL-EBI Fibronectin, type III 2.3E-6
Pfam IPR003961 EMBL-EBI Fibronectin, type III 2.4E-17
Pfam IPR003961 EMBL-EBI Fibronectin, type III 1.4E-12
Pfam IPR000719 EMBL-EBI Protein kinase 2.2E-83
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.6
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.0015
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.017
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 4.5E-5
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.5
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.093
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.0041
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 6.7E-5
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.077
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 5.3E-4
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.0026
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 3.2
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.89
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.48
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.15
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.1
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 9.2E-4
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.0025
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 2.7E-8
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 4.3E-5
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 8.3E-5
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 5.2E-4
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.0022
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.15
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.5E-9
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.022
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 6.4E-5
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.5E-9
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.6E-8
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.0017
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 8.4E-9
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 4.1E-4
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.71
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.8E-8
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 2.4E-10
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.0037
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 4.4E-4
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 2.5
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.6
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 4.0E-7
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.012
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.0084
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 3.5E-5
Pfam IPR003961 EMBL-EBI Fibronectin, type III 1.4E-12
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.5E-9
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.022
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 6.4E-5
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.5E-9
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.6E-8
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.0017
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 8.4E-9
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 4.1E-4
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.71
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.8E-8
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 2.4E-10
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.0037
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 4.4E-4
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 2.5
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.6
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 4.0E-7
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.012
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.0084
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 3.5E-5
Pfam IPR003961 EMBL-EBI Fibronectin, type III 9.3E-14
Pfam IPR003961 EMBL-EBI Fibronectin, type III 1.4E-17
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.5
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.093
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.0026
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 6.7E-5
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.077
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 5.3E-4
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.0026
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 3.2
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.89
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.0041
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 6.7E-5
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.077
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 5.3E-4
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.0026
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 3.2
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.89
Sequence
Target Sequence 
>C. ELEGANS:185778_AT
gaactatcagcgtccaataattgtatttaatcaagctggatcagtgaacaacgaacgaga
actttctgtgaaagtaggagttattgcatcgcctgaaccaacattattctggaaacataa
cggaaaatcaatcgaagaaggaggagattattatttaatttttgaggatggcattggaat
attaaaagttttcaatatccaagatggatctcatgaattcacgtgtattgctaaaaatga
atatgggcaaacaacggttgaaattccagtcgaaattggtttaaaaaccgaaaacaagct
gacacttgtcaaaactttgaatgatattgccgttgtggatgatattgtgcagttaaaaat
agttgctgaaggtgaccttcccattgagttcaaatggtttgaagatgggcagattcttga
agatgacagtagtcataaaataactgttgacaaatgcatttctactctgcaactgaaact
agaagaaactggaacaagaattataacttgtgaagtttctaattcttccagtaaagtaaa
tgcaagctgcaatgtagagcgagtgcacaacactgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACTATCAGCGTCCAATAATTGTA 77 351 7614 Antisense
GAACAACGAACGAGAACTTTCTGTG 590 351 7659 Antisense
GTAGGAGTTATTGCATCGCCTGAAC 625 455 7687 Antisense
TGCATCGCCTGAACCAACATTATTC 179 579 7698 Antisense
GATGGATCTCATGAATTCACGTGTA 650 407 7816 Antisense
ACTTTGAATGATATTGCCGTTGTGG 465 101 7927 Antisense
TGAAGGTGACCTTCCCATTGAGTTC 439 575 7980 Antisense
GTTGACAAATGCATTTCTACTCTGC 381 439 8059 Antisense
GCATTTCTACTCTGCAACTGAAACT 77 309 8069 Antisense
GTGAAGTTTCTAATTCTTCCAGTAA 578 481 8123 Antisense
TGTAGAGCGAGTGCACAACACTGTC 609 559 8166 Antisense
Sequence Source Affymetrix Proprietary Database