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[185776_at]

Description K10F12.6 /REP_DB=WormBase Gene ID /WP=CE12096 /TR=O17236 /GB=AAB71004.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 52      4grp_total > 50      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 4.6
(-3)
A 		27.4
(3)
A 		24.6
(2.3)
A 		10.3
(-1.5)
A 		23
B 7.8
(-2)
A 		27.3
(3)
A 		24.5
(2.3)
A 		4
(-3)
A 		23
C 4.4
(-2.9)
A 		20.6
(3)
A 		10.7
(-0.6)
A 		4
(-3)
A 		17
avr 5.6
(-3) 		25.1
(3) 		19.9
(1.4) 		6.1
(-2.8) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 3.7
(-3)
A 		4
(-2.9)
A 		17.5
(0)
A 		4.6
(-2.8)
A 		31.2
(3)
A 		4.7
(-2.8)
A 		28
B 4.4
(-1.9)
A 		18.2
(3)
A 		7.1
(-1)
A 		1.4
(-3)
A 		2
(-2.8)
A 		2.3
(-2.7)
A 		17
C 8.8
(-1.4)
A 		1.2
(-3)
A 		30
(3)
A 		19.7
(0.9)
A 		3.3
(-2.6)
A 		2
(-2.8)
A 		29
avr 5.6
(-2) 		7.8
(-1.1) 		18.2
(3) 		8.6
(-0.8) 		12.2
(0.6) 		3
(-3) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 1.7
(-2.8)
A 		6
(2.5)
A 		6.4
(3)
A 		1.5
(-3)
A 		5
B 2.5
(-1.3)
A 		6.8
(3)
A 		5.7
(1.9)
A 		0.8
(-3)
A 		6
C 1.4
(-2.2)
A 		5.9
(3)
A 		3.7
(0.5)
A 		0.7
(-3)
A 		5
avr 1.9
(-2) 		6.2
(3) 		5.3
(2) 		1
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 0.7
(-3)
A 		1.4
(-2.5)
A 		3.8
(-0.9)
A 		1.2
(-2.7)
A 		9.4
(3)
A 		1.1
(-2.7)
A 		9
B 1.5
(-1.8)
A 		6
(3)
A 		1.7
(-1.6)
A 		0.4
(-3)
A 		0.8
(-2.6)
A 		0.9
(-2.5)
A 		6
C 3.3
(-0.6)
A 		0.4
(-3)
A 		7.6
(3)
A 		4
(0)
A 		1.1
(-2.4)
A 		0.7
(-2.8)
A 		7
avr 1.8
(-1.5) 		2.6
(-0.1) 		4.4
(3) 		1.9
(-1.3) 		3.8
(2) 		0.9
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185776_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8191
Sequence Type Exemplar sequence
Representative Public ID K10F12.6 NCBI
Target Description K10F12.6 /REP_DB=WormBase Gene ID /WP=CE12096 /TR=O17236 /GB=AAB71004.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064794(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064794 NCBI Caenorhabditis elegans K10F12.6 (K10F12.6) mRNA, complete cds. 11/11 None
K10F12.6 ENSEMBL cdna:known chromosome:CEL140:III:398729:399391:-1 gene:K10F12.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000031884 6/11 Cross Hyb Matching Probes None
SNAP00000031881 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:398728-399391(-) 95.36 100.0
Public Domain and Genome References
Gene Title
Ensembl K10F12.6
Entrez Gene 187275 Entrez gene
SwissProt O17236 EMBL-EBI
WormBase CE12096 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB71004 Hypothetical protein K10F12.6 [Caenorhabditis elegans] ref|NP_497195.1| K10F12.6 [Caenorhabditis elegans] 6.0E-66
Sequence
Target Sequence 
>C. ELEGANS:185776_AT
acggaaacatcaggacatctacaagtttgtcgatatgttgtcaagactcccatttgacga
ctccaatagctccaattgcaccagaactctattcattgaaagtcccgaaagattatactc
cagaaacaacttctacaatgagaagatccctggaatctcggctcgcttggctcggaagac
agagttatgttttccgttctttgaagcaactcgagactgtcacacacaatgcaacaattc
ggacgtttttttggaaggatggctccgtgagcagctca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGGAAACATCAGGACATCTACAAG 82 97 47 Antisense
GTCGATATGTTGTCAAGACTCCCAT 224 473 75 Antisense
ACTCCCATTTGACGACTCCAATAGC 515 99 92 Antisense
GACTCCAATAGCTCCAATTGCACCA 113 373 105 Antisense
CAATTGCACCAGAACTCTATTCATT 664 179 119 Antisense
GCTCGCTTGGCTCGGAAGACAGAGT 213 299 207 Antisense
GACAGAGTTATGTTTTCCGTTCTTT 648 367 224 Antisense
GTTTTCCGTTCTTTGAAGCAACTCG 296 447 235 Antisense
GAAGCAACTCGAGACTGTCACACAC 333 341 249 Antisense
GTCACACACAATGCAACAATTCGGA 123 465 265 Antisense
GAAGGATGGCTCCGTGAGCAGCTCA 130 335 300 Antisense
Sequence Source Affymetrix Proprietary Database