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[185775_at]

Description K01D12.10 /REP_DB=WormBase Gene ID /WP=CE06049 /TR=Q21092 /GB=CAA99869.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 91      4grp_total > 24      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 2.2
(-3)
A 		4.2
(-2.7)
A 		13.1
(-1.5)
A 		45.1
(3)
A 		43
B 3.1
(-3)
A 		6.4
(-2.3)
A 		30.1
(3)
A 		9.2
(-1.6)
A 		27
C 4
(-1.8)
A 		6.4
(-0.4)
A 		1.9
(-3)
A 		12.2
(3)
A 		10
avr 3.1
(-3) 		5.7
(-2.2) 		15
(0.7) 		22.2
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 178
1 2 3 4 5 6 range
A 8.8
(-2.8)
A 		3.5
(-3)
A 		3.4
(-3)
A 		180.9
(3)
P 		138.3
(1.6)
P 		23.4
(-2.3)
A 		178
B 28.1
(-2.1)
A 		6.6
(-2.9)
A 		4.4
(-3)
A 		154.4
(3)
P 		113.2
(1.4)
P 		36.4
(-1.7)
A 		150
C 9.8
(-2.8)
A 		11.3
(-2.7)
A 		3.9
(-3)
A 		145.5
(3)
P 		130.5
(2.4)
P 		48.5
(-1.1)
A 		142
avr 15.6
(-2.6) 		7.1
(-2.9) 		3.9
(-3) 		160.3
(3) 		127.3
(1.7) 		36.1
(-1.8) 		156
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 0.8
(-3)
A 		0.9
(-2.9)
A 		3.4
(-0.3)
A 		6.6
(3)
A 		6
B 1
(-3)
A 		1.6
(-2.4)
A 		7
(3)
A 		2
(-2)
A 		6
C 1.3
(-0.4)
A 		1.8
(1.7)
A 		0.7
(-3)
A 		2.1
(3)
A 		1
avr 1
(-3) 		1.4
(-2.1) 		3.7
(3) 		3.6
(2.8) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 1.6
(-2.9)
A 		1.2
(-2.9)
A 		0.7
(-3)
A 		45.9
(3)
P 		41.7
(2.4)
P 		5.7
(-2.3)
A 		45
B 9.8
(-1.8)
A 		2.2
(-2.9)
A 		1.1
(-3)
A 		40.9
(2.3)
P 		46
(3)
P 		13.6
(-1.3)
A 		45
C 3.6
(-2.6)
A 		3.4
(-2.7)
A 		1
(-3)
A 		29.3
(1.1)
P 		42.2
(3)
P 		16.2
(-0.8)
A 		41
avr 5
(-2.4) 		2.3
(-2.8) 		0.9
(-3) 		38.7
(2.3) 		43.3
(3) 		11.8
(-1.5) 		42
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185775_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13444
Sequence Type Exemplar sequence
Representative Public ID K01D12.10 NCBI
Target Description K01D12.10 /REP_DB=WormBase Gene ID /WP=CE06049 /TR=Q21092 /GB=CAA99869.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073708(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073708 NCBI Caenorhabditis elegans K01D12.10 (K01D12.10) mRNA, complete cds. 11/11 None
SNAP00000007097 ENSEMBL cdna:SNAP chromosome:CEL140:V:12408871:12409589:1 11/11 None
GENEFINDER00000007107 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12408817:12409589:1 11/11 None
K01D12.10 ENSEMBL cdna:known chromosome:CEL140:V:12408984:12409614:1 gene:K01D12.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12408983-12409614(+) 69.06 100.0
Public Domain and Genome References
Gene Title
Ensembl K01D12.10
Entrez Gene 186848 Entrez gene
SwissProt Q21092 EMBL-EBI
WormBase CE06049 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA99869 Hypothetical protein K01D12.10 [Caenorhabditis elegans] ref|NP_506109.1| K01D12.10 [Caenorhabditis elegans] 3.0E-33
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000007107 1 7-26
Sequence
Target Sequence 
>C. ELEGANS:185775_AT
aacgtgcaactgcaactgcgacagcgtctgggactccgacgggtacggccagcgcttcag
gtggttctggtactgctaccgtatctgggacaccaactggaactgcttctgcaatggatt
caagtagctcaggaacgtcaagttccagcagttctagcagttccagtagttccagcagtt
cttcaacaagtgaatcaagcagcacaagcggatccggaagcactagtggatcaggaagtt
ctggagggaaaacaggaggaaaaggaggaggaggaagtggagaaaaaggaggaaaaggag
gaggaggaagtggggaaaaaggaggaaaaggtggaaaagaaggaaaaggaggaaaagatg
gtaaaggcggcggtggaggtggaggtggaggagatggtggtagtgggactggaaacggga
aattcactagaacgaagaagaagaaggatacaaagtgctacgaatatgaggatggatcga
aagatgatggagcagcactcaatcctggagttaaatacaccgcgacagcaactgcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACGTGCAACTGCAACTGCGACAGC 47 145 31 Antisense
GCCAGCGCTTCAGGTGGTTCTGGTA 444 279 78 Antisense
TGGTTCTGGTACTGCTACCGTATCT 86 551 92 Antisense
TACCGTATCTGGGACACCAACTGGA 407 647 107 Antisense
GGAACTGCTTCTGCAATGGATTCAA 560 529 129 Antisense
AGTTCCAGCAGTTCTAGCAGTTCCA 193 65 171 Antisense
AGCAGTTCCAGTAGTTCCAGCAGTT 18 79 186 Antisense
GTTCCAGCAGTTCTTCAACAAGTGA 466 439 199 Antisense
CAAGCAGCACAAGCGGATCCGGAAG 351 185 226 Antisense
TGATGGAGCAGCACTCAATCCTGGA 329 567 515 Antisense
AAATACACCGCGACAGCAACTGCAT 98 117 543 Antisense
Sequence Source Affymetrix Proprietary Database