[Home] | [Total List]

[185772_at]

Description Y50E8A.10 /REP_DB=WormBase Gene ID /WP=CE22317 /TR=Q9NAE8 /GB=CAB55058.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 87      4grp_total > 35      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 31.7
(-3)
A 		83.2
(3)
A 		40.5
(-2)
A 		50.4
(-0.8)
A 		52
B 14.6
(-1.9)
A 		42
(3)
A 		8.3
(-3)
A 		13.7
(-2)
A 		34
C 13.2
(-2.7)
A 		34.5
(0.9)
A 		11.3
(-3)
A 		47.2
(3)
A 		36
avr 19.8
(-3) 		53.2
(3) 		20
(-3) 		37.1
(0.1) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 90
1 2 3 4 5 6 range
A 56.8
(0.1)
A 		13.6
(-3)
A 		56.6
(0.1)
A 		27.5
(-2)
A 		64.9
(0.7)
A 		96.5
(3)
A 		83
B 23.5
(-1.7)
A 		33.1
(-0.8)
A 		8.1
(-3)
A 		25.1
(-1.5)
A 		44.6
(0.2)
A 		76.9
(3)
P 		69
C 20.9
(-1)
A 		6.9
(-3)
A 		18.5
(-1.3)
A 		48.8
(3)
A 		17.3
(-1.5)
A 		39.4
(1.7)
A 		42
avr 33.7
(-1.2) 		17.9
(-3) 		27.7
(-1.9) 		33.8
(-1.2) 		42.3
(-0.2) 		70.9
(3) 		53
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 11.5
(-0.7)
A 		18.1
(3)
A 		10.6
(-1.2)
A 		7.4
(-3)
A 		11
B 4.6
(-1.1)
A 		10.4
(3)
A 		1.9
(-3)
A 		2.9
(-2.3)
A 		9
C 4.4
(-2.5)
A 		9.9
(3)
A 		3.9
(-3)
A 		8
(1.1)
A 		6
avr 6.8
(-1.9) 		12.8
(3) 		5.5
(-3) 		6.1
(-2.5) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 10.5
(-1.2)
A 		4.8
(-3)
A 		12.3
(-0.6)
A 		7
(-2.3)
A 		19.6
(1.7)
A 		23.5
(3)
A 		19
B 8.2
(-1.6)
A 		11
(-1)
A 		2
(-3)
A 		6.7
(-1.9)
A 		18.1
(0.6)
A 		28.7
(3)
P 		27
C 7.8
(0.1)
A 		2.1
(-3)
A 		4.7
(-1.6)
A 		9.8
(1.2)
A 		5.6
(-1.1)
A 		13.2
(3)
A 		11
avr 8.8
(-1.9) 		6
(-3) 		6.3
(-2.9) 		7.8
(-2.3) 		14.4
(0.2) 		21.8
(3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185772_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13448
Sequence Type Exemplar sequence
Representative Public ID Y50E8A.10 NCBI
Target Description Y50E8A.10 /REP_DB=WormBase Gene ID /WP=CE22317 /TR=Q9NAE8 /GB=CAB55058.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074246(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074246 NCBI Caenorhabditis elegans Y50E8A.10 (Y50E8A.10) mRNA, complete cds. 11/11 None
GENEFINDER00000009978 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14782670:14783667:1 11/11 None
Y50E8A.10 ENSEMBL cdna:known chromosome:CEL140:V:14782644:14783667:1 gene:Y50E8A.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000008993 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14782669-14783667(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y50E8A.10
Entrez Gene 179977 Entrez gene
SwissProt Q9NAE8 EMBL-EBI
WormBase CE22317 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB55058 Hypothetical protein Y50E8A.10 [Caenorhabditis elegans] ref|NP_506647.1| Y50E8A.10 [Caenorhabditis elegans] 3.0E-69
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506647.1 1 5-27
Y50E8A.10 1 5-27
GENEFINDER00000009978 1 5-27
Sequence
Target Sequence 
>C. ELEGANS:185772_AT
tacattctttatcttcaactctttcataatgataacgagcaccatattcatcatttgctt
ttgcaaaccaccccgtcagaagaacagttgtcatgttcgggagatgacaaattccatgag
agcggcgccgatctcggatgcaataccggatagtactcgaactgcgttggacaaagaaga
gaagaagaaaaggagcaaagattcatcgaaaaagtcaaacaagaagaacaaaaagaagaa
gtcagcggattcttccatgaaaatttcgaaaaaatcgagcaagtcgaagaaatccaaaaa
atctgagaaagggaagaaaccagaagcccgagggagggatgagggcgagaactcaacgca
aagatctggagcggctgagacaaacggaccacccgttacagctaaaagtgcattgagtaa
aaccgctaaaagcgttccgaatgcccctaacaccagtgtcaagccgacttctctagctgc
caattctccagccccgtcgtacacaaacccaggaacaccagctgctaattcggttcccga
tacagccaacccaagatcgcttccagttggaattcccggtgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACATTCTTTATCTTCAACTCTTTC 417 645 30 Antisense
CACCATATTCATCATTTGCTTTTGC 462 201 69 Antisense
AACCACCCCGTCAGAAGAACAGTTG 577 147 95 Antisense
CAAATTCCATGAGAGCGGCGCCGAT 173 193 137 Antisense
GCGCCGATCTCGGATGCAATACCGG 471 287 154 Antisense
GATAGTACTCGAACTGCGTTGGACA 201 425 178 Antisense
GACAAACGGACCACCCGTTACAGCT 50 355 408 Antisense
TAACACCAGTGTCAAGCCGACTTCT 228 639 477 Antisense
GTCGTACACAAACCCAGGAACACCA 332 459 525 Antisense
AACACCAGCTGCTAATTCGGTTCCC 320 137 543 Antisense
GCTTCCAGTTGGAATTCCCGGTGCT 50 307 588 Antisense
Sequence Source Affymetrix Proprietary Database