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[185771_at]

Description C33A12.14 /REP_DB=WormBase Gene ID /WP=CE15667 /TR=O17634 /GB=CAA92797.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 11      4grp_total > 30      6grp_cgc > 53      6grp_cgc_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 92
1 2 3 4 range
A 93.7
(2.6)
P 		53
(-3)
A 		54.7
(-2.8)
A 		96.3
(3)
A 		43
B 78.3
(3)
P 		78.5
(3)
A 		47.2
(-3)
A 		54.8
(-1.5)
A 		31
C 139.3
(3)
P 		70
(-2.1)
P 		57.3
(-3)
M 		102.7
(0.3)
P 		82
avr 103.8
(3) 		67.2
(-1.3) 		53.1
(-3) 		84.6
(0.7) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 93
1 2 3 4 5 6 range
A 78.4
(0.6)
M 		103.2
(3)
P 		68.2
(-0.4)
A 		49.2
(-2.2)
A 		88.9
(1.6)
A 		41
(-3)
A 		62
B 60.8
(-1)
P 		104.9
(3)
P 		86.5
(1.3)
P 		68.5
(-0.3)
P 		57
(-1.4)
A 		39.2
(-3)
A 		66
C 51.7
(-1.1)
A 		115.7
(3)
P 		67.1
(-0.1)
A 		49.4
(-1.3)
A 		46.2
(-1.5)
A 		22.5
(-3)
A 		93
avr 63.6
(-0.6) 		107.9
(3) 		73.9
(0.2) 		55.7
(-1.2) 		64
(-0.6) 		34.2
(-3) 		74
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 34.1
(3)
P 		11.5
(-3)
A 		14.3
(-2.3)
A 		14.1
(-2.3)
A 		23
B 25
(3)
P 		19.4
(0.6)
A 		10.9
(-3)
A 		11.7
(-2.7)
A 		14
C 46.1
(3)
P 		20.1
(-2.4)
P 		20
(-2.4)
M 		17.3
(-3)
P 		29
avr 35.1
(3) 		17
(-2.2) 		15.1
(-2.8) 		14.4
(-3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 14.4
(-2)
M 		36.7
(3)
P 		14.9
(-1.9)
A 		12.5
(-2.4)
A 		26.8
(0.8)
A 		10
(-3)
A 		27
B 21.2
(-1)
P 		34.9
(3)
P 		21
(-1.1)
P 		18.1
(-2)
P 		23.2
(-0.5)
A 		14.6
(-3)
A 		20
C 19.2
(-0.5)
A 		35.3
(3)
P 		17.1
(-0.9)
A 		9.9
(-2.5)
A 		14.9
(-1.4)
A 		7.5
(-3)
A 		28
avr 18.3
(-1.2) 		35.6
(3) 		17.7
(-1.3) 		13.5
(-2.3) 		21.6
(-0.4) 		10.7
(-3) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185771_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8497
Sequence Type Exemplar sequence
Representative Public ID C33A12.14 NCBI
Target Description C33A12.14 /REP_DB=WormBase Gene ID /WP=CE15667 /TR=O17634 /GB=CAA92797.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069275(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069275 NCBI Caenorhabditis elegans Serpentine Receptor, class U family member (sru-1) (sru-1) mRNA, complete cds. 11/11 None
SNAP00000009021 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9489325:9490171:1 11/11 None
C33A12.14 ENSEMBL cdna:known chromosome:CEL140:IV:9488647:9490171:1 gene:C33A12.14 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9488652-9490177(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol sru-1
Ensembl C33A12.14
Entrez Gene 183146 Entrez gene
SwissProt O17634 EMBL-EBI
WormBase CE34527 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92797 Hypothetical protein C33A12.14 [Caenorhabditis elegans] ref|NP_501676.2| Serpentine Receptor, class U family member (sru-1) [Caenorhabditis elegans] 0.0
blast CAE74025 Hypothetical protein CBG21673 [Caenorhabditis briggsae] 1.0E-148
blast CAA92796 Hypothetical protein C33A12.13 [Caenorhabditis elegans] ref|NP_501675.1| Serpentine Receptor, class U family member (sru-2) [Caenorhabditis elegans] 1.0E-116
blast CAA92797 Hypothetical protein C33A12.14 [Caenorhabditis elegans] ref|NP_501676.2| Serpentine Receptor, class U family member (sru-1) [Caenorhabditis elegans] 2.0E-99
blast CAE74025 Hypothetical protein CBG21673 [Caenorhabditis briggsae] 4.0E-79
blast CAA92796 Hypothetical protein C33A12.13 [Caenorhabditis elegans] ref|NP_501675.1| Serpentine Receptor, class U family member (sru-2) [Caenorhabditis elegans] 1.0E-59
Protein Domains
Database ID Description E-Value
Pfam IPR003839 EMBL-EBI Protein of unknown function DUF215 1.1E-87
Pfam IPR003839 EMBL-EBI Protein of unknown function DUF215 2.5E-39
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501676.2 6 30-52,65-87,111-133,154-176,206-228,249-271
C33A12.14 6 30-52,65-87,111-133,154-176,206-228,249-271
SNAP00000009021 3 7-25,55-77,98-120
Sequence
Target Sequence 
>C. ELEGANS:185771_AT
gagaattgctgttccagttgctctaatctatccaatttgcttcacattttttctgattcc
tgcaataggagtatgtaagcaattagagttcccatatcaattcggatcaatttgggttta
ctacgtcggtcctgcgtttggactccgtaacactccgttcttcctggccaacgcgtcatt
ttggctagcatgctctgttctagccaatttaattttattcctgaaactaacacgtgccag
agaacagctgataactcaacaagttagcagcatatcatacagagcacaagtatcaataac
gtatactacaattgcaatgattgtcttctatgtcacaaatggattaactctgctttccta
ttatcaattctacggaaccaattctgtcatgtcatacactttgttagctcgaccgtttgg
a

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGAATTGCTGTTCCAGTTGCTCTA 339 391 528 Antisense
TGCTCTAATCTATCCAATTTGCTTC 509 581 546 Antisense
GCTTCACATTTTTTCTGATTCCTGC 552 305 566 Antisense
AGAGTTCCCATATCAATTCGGATCA 282 69 612 Antisense
TACTACGTCGGTCCTGCGTTTGGAC 614 643 646 Antisense
GTCCTGCGTTTGGACTCCGTAACAC 236 471 656 Antisense
AACGCGTCATTTTGGCTAGCATGCT 646 145 697 Antisense
TAGCATGCTCTGTTCTAGCCAATTT 136 651 713 Antisense
GATTAACTCTGCTTTCCTATTATCA 54 431 869 Antisense
CGGAACCAATTCTGTCATGTCATAC 698 241 900 Antisense
CACTTTGTTAGCTCGACCGTTTGGA 213 195 924 Antisense
Sequence Source Affymetrix Proprietary Database