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[185770_at]

Description C50E10.4 /REP_DB=WormBase Gene ID /WP=CE19758 /TR=Q9TZK0 /GB=AAC67443.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 34      6grp_total > 01      4grp_total > 13      6grp_cgc > 54      6grp_high1_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 355
1 2 3 4 range
A 278.1
(-0.1)
P 		227.5
(-1.5)
M 		173.7
(-3)
A 		388
(3)
P 		214
B 260.9
(-1.2)
P 		155.8
(-3)
A 		165
(-2.8)
A 		510.6
(3)
P 		355
C 327.5
(2.3)
P 		234.4
(-1.2)
A 		188.1
(-3)
A 		346.1
(3)
P 		158
avr 288.8
(-0.2) 		205.9
(-2.2) 		175.6
(-3) 		414.9
(3) 		239

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 177
1 2 3 4 5 6 range
A 131.2
(-3)
P 		308
(3)
P 		136.5
(-2.8)
P 		142.6
(-2.6)
P 		150.6
(-2.3)
P 		259.4
(1.4)
P 		177
B 197.1
(1.1)
P 		217.1
(3)
P 		188.2
(0.2)
P 		169.7
(-1.6)
P 		155.3
(-3)
P 		185.4
(-0.1)
P 		62
C 211.3
(1.6)
P 		231.6
(3)
P 		192.1
(0.3)
P 		155.4
(-2.3)
A 		167.7
(-1.4)
A 		145
(-3)
P 		87
avr 179.9
(-1.5) 		252.2
(3) 		172.3
(-2) 		155.9
(-3) 		157.9
(-2.9) 		196.6
(-0.5) 		96
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 101.2
(3)
P 		49.4
(-2.6)
M 		45.4
(-3)
A 		56.8
(-1.8)
P 		56
B 83.2
(0.8)
P 		38.5
(-3)
A 		38.2
(-3)
A 		108.8
(3)
P 		71
C 108.4
(3)
P 		67.4
(-1.9)
A 		65.5
(-2.1)
A 		58.4
(-3)
P 		50
avr 97.6
(3) 		51.8
(-2.7) 		49.7
(-3) 		74.7
(0.1) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 85
1 2 3 4 5 6 range
A 24.2
(-3)
P 		109.5
(3)
P 		29.7
(-2.6)
P 		36.2
(-2.2)
P 		45.5
(-1.5)
P 		63.2
(-0.3)
P 		85
B 68.6
(2.2)
P 		72.2
(3)
P 		45.7
(-2.8)
P 		44.9
(-3)
P 		63.1
(1)
P 		69.1
(2.3)
P 		27
C 78.3
(3)
P 		70.7
(2)
P 		48.9
(-0.7)
P 		31.2
(-3)
A 		54.3
(-0.1)
A 		48.6
(-0.8)
P 		47
avr 57
(-0.5) 		84.1
(3) 		41.4
(-2.5) 		37.4
(-3) 		54.3
(-0.8) 		60.3
(-0.1) 		47
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185770_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3320
Sequence Type Exemplar sequence
Representative Public ID C50E10.4 NCBI
Target Description C50E10.4 /REP_DB=WormBase Gene ID /WP=CE19758 /TR=Q9TZK0 /GB=AAC67443.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064220
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064220 NCBI Caenorhabditis elegans Suppressor of Pal-1 family member (sop-2) (sop-2) mRNA, complete cds. A 
C50E10.4 ENSEMBL cdna:known chromosome:CEL140:II:12339847:12344668:1 gene:C50E10.4 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12339845-12343765(+) 88.71 100.0
Public Domain and Genome References
Gene Title
Gene Symbol sop-2
Ensembl C50E10.4
Entrez Gene 174874 Entrez gene
SwissProt Q965H3 EMBL-EBI
WormBase CE32334 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_496621 Suppressor of Pal-1 family member (sop-2) [Caenorhabditis elegans] gb|AAK73863.2| Suppressor of pal-1 protein 2 [Caenorhabditis elegans] sp|Q965H3|SOP2_CAEEL Polycomb protein sop-2 (Suppressor of pal-1 protein 2) 0.0
blast T33498 hypothetical protein C50E10.4 - Caenorhabditis elegans 0.0
blast B88331 protein C44C11.2 [imported] - Caenorhabditis elegans pir||T32954 hypothetical protein C44C11.2 - Caenorhabditis elegans (fragment) 2.0E-46
Sequence
Target Sequence 
>C. ELEGANS:185770_AT
accagagtctgaaactccgccagttctgcagcaagagcaggtgatctccacagcagcacc
gacagccggtcgccatccaaacatcattcagcaggtcccgcacatcaatcggatcccgcc
acaaccgctgagacgtctcacagctcctcaggctccaccagcatcccagccagaagagcc
tccagttcagcagactgttccggtggttaaagtcgaattggcttcagctccagctccaat
cgtcagggatccacagtcaacggagccagttccacctgcgatgcctacacttgtcgagaa
caaccacgaagctacgctcattttgccgcccaacaagacatcagactacacaaggtggaa
cgtaagttttttaaggctcaggcttaggcttaggcttaggtgtaggcttaggcttaggcg
taggcttaggctctggtttgggcttaggtttcagcttaagcataggctcaggctcaagtt
caggttcagatctaggcttaggcttaggcttagtattaggcataggttagccttaggctc
tctctct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACCAGAGTCTGAAACTCCGCCAGTT 222 83 1584 Antisense
GCAAGAGCAGGTGATCTCCACAGCA 310 321 1614 Antisense
TCCAAACATCATTCAGCAGGTCCCG 64 589 1659 Antisense
CCAGAAGAGCCTCCAGTTCAGCAGA 140 273 1753 Antisense
TTCAGCAGACTGTTCCGGTGGTTAA 388 681 1769 Antisense
GATCCACAGTCAACGGAGCCAGTTC 565 415 1831 Antisense
CTGCGATGCCTACACTTGTCGAGAA 83 237 1859 Antisense
CCACGAAGCTACGCTCATTTTGCCG 124 275 1887 Antisense
TAGGCTTAGGCTCTGGTTTGGGCTT 413 651 2004 Antisense
ATAGGCTCAGGCTCAAGTTCAGGTT 164 3 2045 Antisense
TAGGTTAGCCTTAGGCTCTCTCTCT 436 653 2106 Antisense
Sequence Source Affymetrix Proprietary Database