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[185769_at]

Description ZK1248.9 /REP_DB=WormBase Gene ID /WP=CE02909 /TR=Q23417 /GB=AAC71090.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 56      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 6.8
(-1.5)
A 		5.7
(-1.9)
A 		19.6
(3)
A 		2.7
(-3)
A 		17
B 3.7
(-3)
A 		3.9
(-2.9)
A 		24.3
(3)
A 		6.1
(-2.3)
A 		21
C 5
(-1)
A 		9.3
(2.7)
A 		2.7
(-3)
A 		9.7
(3)
A 		7
avr 5.2
(-3) 		6.3
(-2.4) 		15.5
(3) 		6.2
(-2.4) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 5.7
(1.8)
A 		4.9
(0)
A 		6.2
(3)
A 		5
(0.2)
A 		4
(-2.1)
A 		3.6
(-3)
A 		3
B 3.3
(-1.5)
A 		4.7
(0.6)
A 		6.3
(3)
A 		2.3
(-3)
A 		3
(-2)
A 		3.8
(-0.8)
A 		4
C 5.9
(-1.8)
A 		4.1
(-2.3)
A 		22.1
(3)
A 		1.7
(-3)
A 		13.8
(0.6)
A 		5.9
(-1.8)
A 		20
avr 5
(-1.6) 		4.6
(-1.9) 		11.5
(3) 		3
(-3) 		6.9
(-0.2) 		4.4
(-2) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 2.5
(-0.3)
A 		1.2
(-2)
A 		5.1
(3)
A 		0.4
(-3)
A 		5
B 1.2
(-2.7)
A 		1
(-3)
A 		5.6
(3)
A 		1.3
(-2.6)
A 		5
C 1.6
(-0.7)
A 		2.7
(3)
A 		0.9
(-3)
A 		1.6
(-0.7)
A 		2
avr 1.8
(-1.5) 		1.6
(-1.9) 		3.9
(3) 		1.1
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 1.1
(-1.5)
A 		1.7
(3)
A 		1.4
(0.8)
A 		1.3
(0)
A 		1.2
(-0.8)
A 		0.9
(-3)
A 		1
B 1.1
(0)
A 		1.6
(3)
A 		1.5
(2.4)
A 		0.6
(-3)
A 		1.2
(0.6)
A 		1.4
(1.8)
A 		1
C 2.2
(-0.8)
A 		1.2
(-2)
A 		5.6
(3)
A 		0.3
(-3)
A 		4.5
(1.8)
A 		2
(-1.1)
A 		5
avr 1.5
(-0.7) 		1.5
(-0.7) 		2.8
(3) 		0.7
(-3) 		2.3
(1.6) 		1.4
(-1) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185769_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5678
Sequence Type Exemplar sequence
Representative Public ID ZK1248.9 NCBI
Target Description ZK1248.9 /REP_DB=WormBase Gene ID /WP=CE02909 /TR=Q23417 /GB=AAC71090.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062752(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062752 NCBI Caenorhabditis elegans ZK1248.9 (ZK1248.9) mRNA, complete cds. 11/11 None
SNAP00000041372 ENSEMBL cdna:SNAP chromosome:CEL140:II:5812340:5816368:-1 11/11 None
GENEFINDER00000041390 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5812340:5815446:-1 10/11 None
ZK1248.9 ENSEMBL cdna:known chromosome:CEL140:II:5814218:5815446:-1 gene:ZK1248.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5814214-5815443(-) 97.71 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK1248.9
Entrez Gene 191547 Entrez gene
SwissProt Q23417 EMBL-EBI
WormBase CE02909 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC71090 Hypothetical protein ZK1248.9 [Caenorhabditis elegans] ref|NP_495153.1| ZK1248.9 [Caenorhabditis elegans] 0.0
blast CAA95839 Hypothetical protein R06C7.1 [Caenorhabditis elegans] ref|NP_492045.1| R06C7.1 [Caenorhabditis elegans] sp|Q21770|GCC7_CAEEL Germ cell expressed protein R06C7.1 0.0
blast AAB54129 Hypothetical protein F55A12.1 [Caenorhabditis elegans] ref|NP_491579.1| F55A12.1 [Caenorhabditis elegans] 0.0
blast CAE66929 Hypothetical protein CBG12321 [Caenorhabditis briggsae] 0.0
blast CAA95839 Hypothetical protein R06C7.1 [Caenorhabditis elegans] ref|NP_492045.1| R06C7.1 [Caenorhabditis elegans] sp|Q21770|GCC7_CAEEL Germ cell expressed protein R06C7.1 1.0E-179
Protein Domains
Database ID Description E-Value
Pfam IPR003100 EMBL-EBI Argonaute and Dicer protein, PAZ 1.5E-34
Pfam IPR003165 EMBL-EBI Stem cell self-renewal protein Piwi 1.0E-126
Pfam IPR003100 EMBL-EBI Argonaute and Dicer protein, PAZ 8.2E-23
Pfam IPR003165 EMBL-EBI Stem cell self-renewal protein Piwi 1.0E-126
Pfam IPR003100 EMBL-EBI Argonaute and Dicer protein, PAZ 1.3E-14
Sequence
Target Sequence 
>C. ELEGANS:185769_AT
ttgccgtgcatctctcttgagattcatgcaccacgagacaattccatcaccatctctgct
aaaatcctgggcgagcgtactgctgatcaaaacattgaagtgaacaatcgtgaatacact
caattcctggaacttgctttgaatcaacattgcacgagggaaacaaagcgtttcggatgt
ttcgagcatggaaaagtatatttcctcaacgccaccgaggaaggatttgatcagcgagat
tgtgtcgacgttggcgacggaaaagcgctgtatcctggcctcaagaagacgatccaattc
attgaaggtccgttcggtcgtggacagaacaatccatctcttgtgattgatggcatgaaa
gctgctttccataaagagcaaactgtgatccagaagctctttgagattacgggacaagat
ccatcaaacgggctcagtagtatggctcgtgagaaggctactccagtgattaaaggactc
gattgctattcaatgtacacgagcagaaagcgtcatctgagaatcgtaggaatcttccac
gaaagtgccacagggacgagattcgagttgccgatgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGCCGTGCATCTCTCTTGAGATTC 223 703 526 Antisense
GATTCATGCACCACGAGACAATTCC 110 431 546 Antisense
ATCACCATCTCTGCTAAAATCCTGG 363 29 571 Antisense
TAAAATCCTGGGCGAGCGTACTGCT 505 627 585 Antisense
AGCGAGATTGTGTCGACGTTGGCGA 198 81 758 Antisense
ACGGAAAAGCGCTGTATCCTGGCCT 584 95 782 Antisense
ATTCATTGAAGGTCCGTTCGGTCGT 486 9 822 Antisense
GACAAGATCCATCAAACGGGCTCAG 496 361 938 Antisense
ACGGGCTCAGTAGTATGGCTCGTGA 120 95 953 Antisense
GGCTCGTGAGAAGGCTACTCCAGTG 305 537 969 Antisense
GGGACGAGATTCGAGTTGCCGATGG 367 493 1078 Antisense
Sequence Source Affymetrix Proprietary Database