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[185768_at]

Description F59E12.3 /REP_DB=WormBase Gene ID /WP=CE17143 /TR=O01899 /GB=AAB54262.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 67      4grp_total > 12      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 5.6
(-2.2)
A 		5.1
(-2.5)
A 		3.9
(-3)
A 		17.4
(3)
A 		14
B 4.4
(0.1)
A 		2.1
(-2.5)
A 		1.7
(-3)
A 		7
(3)
A 		5
C 5.9
(2.4)
A 		4.3
(0.4)
A 		1.5
(-3)
A 		6.4
(3)
A 		5
avr 5.3
(-0.8) 		3.8
(-1.9) 		2.4
(-3) 		10.3
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 3.4
(-1.3)
A 		1.4
(-3)
A 		2.7
(-1.9)
A 		2.6
(-2)
A 		3.1
(-1.5)
A 		8.3
(3)
A 		7
B 6.6
(-1.4)
A 		5.4
(-1.8)
A 		1.6
(-3)
A 		1.9
(-2.9)
A 		2.1
(-2.8)
A 		20.4
(3)
A 		19
C 1.5
(-3)
A 		3.2
(-2.7)
A 		6.3
(-2.2)
A 		3.5
(-2.7)
A 		4.8
(-2.5)
A 		38.8
(3)
A 		37
avr 3.8
(-2.7) 		3.3
(-2.8) 		3.5
(-2.8) 		2.7
(-3) 		3.3
(-2.8) 		22.5
(3) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 2
(1)
A 		1.1
(-2.6)
A 		1
(-3)
A 		2.5
(3)
A 		2
B 1.4
(2.5)
A 		0.5
(-2.5)
A 		0.4
(-3)
A 		1.5
(3)
A 		1
C 2
(3)
A 		1.2
(-0.2)
A 		0.5
(-3)
A 		1.1
(-0.6)
A 		2
avr 1.8
(3) 		0.9
(-1.5) 		0.6
(-3) 		1.7
(2.5) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 0.6
(-2.6)
A 		0.5
(-3)
A 		0.6
(-2.6)
A 		0.7
(-2.2)
A 		0.9
(-1.4)
A 		2
(3)
A 		2
B 2.3
(-1.4)
A 		1.8
(-1.8)
A 		0.4
(-3)
A 		0.5
(-2.9)
A 		0.8
(-2.7)
A 		7.6
(3)
A 		7
C 0.5
(-3)
A 		1
(-2.8)
A 		1.6
(-2.5)
A 		0.7
(-2.9)
A 		1.5
(-2.5)
A 		13
(3)
A 		13
avr 1.1
(-2.6) 		1.1
(-2.6) 		0.9
(-2.7) 		0.6
(-3) 		1.1
(-2.6) 		7.5
(3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185768_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5643
Sequence Type Exemplar sequence
Representative Public ID F59E12.3 NCBI
Target Description F59E12.3 /REP_DB=WormBase Gene ID /WP=CE17143 /TR=O01899 /GB=AAB54262.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Consensus/Exemplar Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade C annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062698
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000018066 ENSEMBL cdna:SNAP chromosome:CEL140:II:5639301:5639729:1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_062698 2/11 Cross Hyb Matching Probes None
F59E12.3 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5638352-5639752(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB18314 Hypothetical protein K11C4.1 [Caenorhabditis elegans] ref|NP_504751.1| K11C4.1 [Caenorhabditis elegans] 2.0E-9
blast CAA97422 Hypothetical protein C08F8.6 [Caenorhabditis elegans] ref|NP_502093.1| C08F8.6 [Caenorhabditis elegans] 5.0E-9
blast CAE68129 Hypothetical protein CBG13774 [Caenorhabditis briggsae] 7.0E-9
Sequence
Target Sequence 
>C. ELEGANS:185768_AT
gagtcgtcgatactgtggtcaagataatgtaatctatcagccccgaacaagatgccaatt
tcggggtacccccgtttatgcgcccagggcatcccacaatcgagctgaacacaaccgaaa
gagtgatctggaaagctggggctacatgatgatagagatgacaaccggaaagctaccatg
gtatatcgatggactaagcttctttgaggagccaaactatcgttacatatatgatgcatt
gaggcgagtaatgaagagatgccgtctgaaggaatttccttttgattgggagccggcttc
taagaagcgcttcactctcaaatcactttggcctcgttgtaagttatttcctatttcgca
aaagttgatattcaatttccagaactcgtcttccttgatatcaacttgtggtttcaactt
gttgttcatcaagtcactttcaaccattacatcaagttatttctatcaactctacactac
tccatatggtctctgtcaattatccaacactt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGTCGTCGATACTGTGGTCAAGAT 240 401 483 Antisense
TCTATCAGCCCCGAACAAGATGCCA 533 613 515 Antisense
CATCCCACAATCGAGCTGAACACAA 5 213 572 Antisense
CCTTTTGATTGGGAGCCGGCTTCTA 415 267 760 Antisense
GGCTTCTAAGAAGCGCTTCACTCTC 398 537 777 Antisense
CACTCTCAAATCACTTTGGCCTCGT 450 197 795 Antisense
TGGCCTCGTTGTAAGTTATTTCCTA 188 545 811 Antisense
TTCCAGAACTCGTCTTCCTTGATAT 345 699 859 Antisense
TATTTCTATCAACTCTACACTACTC 99 663 940 Antisense
TACACTACTCCATATGGTCTCTGTC 485 643 955 Antisense
GGTCTCTGTCAATTATCCAACACTT 454 503 970 Antisense
Sequence Source Affymetrix Proprietary Database