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[185767_at]

Description H01M10.1 /REP_DB=WormBase Gene ID /WP=CE19912 /TR=Q9N5P5 /GB=AAF39864.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 32      6grp_high1_10_10 > 12      4grp_highest_8_8 > 49      4grp_high_8_8 > 41      6grp_highest_nonorm > 61      6grp_total > 23      4grp_total > 54      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S2      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 938
1 2 3 4 range
A 1091.6
(3)
P 		534.7
(-1)
P 		444.1
(-1.7)
P 		261.1
(-3)
P 		831
B 1145.2
(3)
P 		566.2
(-0.7)
P 		504.3
(-1.1)
P 		207.7
(-3)
P 		938
C 1094.7
(3)
P 		556.5
(-0.7)
P 		442.6
(-1.5)
P 		216.1
(-3)
P 		879
avr 1110.5
(3) 		552.5
(-0.8) 		463.7
(-1.4) 		228.3
(-3) 		882

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 437
1 2 3 4 5 6 range
A 627.1
(3)
P 		582.9
(2.3)
P 		545.9
(1.6)
P 		417.2
(-0.5)
P 		267.8
(-3)
P 		271.2
(-2.9)
P 		359
B 601.1
(3)
P 		559.4
(2.4)
P 		522.3
(1.8)
P 		369.2
(-0.4)
P 		300
(-1.4)
P 		190.7
(-3)
P 		410
C 534.3
(1.6)
P 		627.9
(3)
P 		530.9
(1.6)
P 		561.1
(2)
P 		242.7
(-2.6)
P 		215.1
(-3)
P 		413
avr 587.5
(3) 		590.1
(3) 		533
(2.1) 		449.2
(0.7) 		270.2
(-2.3) 		225.7
(-3) 		364
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 361
1 2 3 4 range
A 397.5
(3)
P 		116.1
(-1.7)
P 		116.1
(-1.7)
P 		38.2
(-3)
P 		359
B 365.2
(3)
P 		139.8
(-1.2)
P 		116.9
(-1.6)
P 		44.3
(-3)
P 		321
C 362.4
(3)
P 		160
(-0.7)
P 		154.3
(-0.8)
P 		36.4
(-3)
P 		326
avr 375
(3) 		138.6
(-1.2) 		129.1
(-1.4) 		39.6
(-3) 		335

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 143
1 2 3 4 5 6 range
A 115.6
(-0.9)
P 		207.3
(3)
P 		118.9
(-0.8)
P 		105.8
(-1.3)
P 		80.8
(-2.4)
P 		66
(-3)
P 		141
B 209.2
(3)
P 		186.2
(2)
P 		126.8
(-0.6)
P 		97.8
(-1.8)
P 		121.9
(-0.8)
P 		71.1
(-3)
P 		138
C 198
(3)
P 		191.6
(2.7)
P 		135.1
(0)
P 		112.8
(-1.1)
P 		78.5
(-2.7)
P 		72
(-3)
P 		126
avr 174.3
(2) 		195
(3) 		126.9
(-0.3) 		105.5
(-1.3) 		93.7
(-1.9) 		69.7
(-3) 		125
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185767_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18148
Sequence Type Exemplar sequence
Representative Public ID H01M10.1 NCBI
Target Description H01M10.1 /REP_DB=WormBase Gene ID /WP=CE19912 /TR=Q9N5P5 /GB=AAF39864.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076065(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076065 NCBI Caenorhabditis elegans H01M10.1 (H01M10.1) mRNA, complete cds. 11/11 None
GENEFINDER00000030585 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:2578332:2580562:-1 11/11 None
SNAP00000030583 ENSEMBL cdna:SNAP chromosome:CEL140:X:2578472:2580562:-1 11/11 None
H01M10.1 ENSEMBL cdna:known chromosome:CEL140:X:2578218:2580801:-1 gene:H01M10.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2578471-2580801(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl H01M10.1
Entrez Gene 186663 Entrez gene
SwissProt Q9N5P5 EMBL-EBI
WormBase CE19912 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF39864 Hypothetical protein H01M10.1 [Caenorhabditis elegans] ref|NP_508466.1| H01M10.1 [Caenorhabditis elegans] 0.0
blast AAF39864 Hypothetical protein H01M10.1 [Caenorhabditis elegans] ref|NP_508466.1| H01M10.1 [Caenorhabditis elegans] 1.0E-149
blast AAF39864 Hypothetical protein H01M10.1 [Caenorhabditis elegans] ref|NP_508466.1| H01M10.1 [Caenorhabditis elegans] 1.0E-138
blast CAE58855 Hypothetical protein CBG02080 [Caenorhabditis briggsae] 4.0E-84
blast CAE58855 Hypothetical protein CBG02080 [Caenorhabditis briggsae] 2.0E-83
Sequence
Target Sequence 
>C. ELEGANS:185767_AT
caaccaatcacatcgacatctccgaacaacaacaataaatcacgaatcaattcattgcca
agcagtgatgttccatctacctccgcatcgtgctctcaacctcgagcaccgtcagtgtat
gaagatccatttgttgcagtggccgccgatggcactattcacattaagcattattacaat
ttcaatagccgagccgaatttcatctagatgatattcgacatggacatgttagaagaaat
tgtcgcgtcattaaagcaaaagatgtgctgaaggtgttttacgcggccggaatcgactgc
aaagatgagtcgctctgcaagagttggggaatttgtattaacaacgtttggtgggcaagc
catctaaataggatggaaggtgccaacgcgtacacaaacgtagtcctcgtcgaggacagc
atgatgcacgcaggtttctctgtcatcaacattgaagcgttcgccgagacaattcaatgt
gtcgggttgccaagagattcgcctttccaaaatggtctacccaatccgccgatcagtatg
ctcaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAACCAATCACATCGACATCTCCGA 121 187 346 Antisense
AAGCAGTGATGTTCCATCTACCTCC 416 151 405 Antisense
CAACCTCGAGCACCGTCAGTGTATG 548 185 442 Antisense
ATAGCCGAGCCGAATTTCATCTAGA 246 23 530 Antisense
TGCTGAAGGTGTTTTACGCGGCCGG 224 581 611 Antisense
GCGTACACAAACGTAGTCCTCGTCG 246 245 733 Antisense
GATGCACGCAGGTTTCTCTGTCATC 464 413 768 Antisense
AGCGTTCGCCGAGACAATTCAATGT 80 81 801 Antisense
TTGCCAAGAGATTCGCCTTTCCAAA 274 701 832 Antisense
TCCAAAATGGTCTACCCAATCCGCC 95 585 851 Antisense
CAATCCGCCGATCAGTATGCTCAAA 588 181 867 Antisense
Sequence Source Affymetrix Proprietary Database