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[185766_at]

Description C02A12.3 /REP_DB=WormBase Gene ID /WP=CE07827 /TR=O16200 /GB=AAB65266.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 56      4grp_total > 44      6grp_cgc > 37      6grp_cgc_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 6.2
(-1.2)
A 		4.4
(-3)
A 		5.9
(-1.5)
A 		10.4
(3)
A 		6
B 23.8
(1.8)
A 		28
(3)
A 		16.4
(-0.2)
A 		6.2
(-3)
A 		22
C 18
(-1.7)
A 		23.6
(2.7)
A 		16.3
(-3)
A 		24
(3)
A 		8
avr 16
(0.2) 		18.7
(3) 		12.9
(-3) 		13.5
(-2.4) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 7
(-2.2)
A 		10.9
(-1.4)
A 		22.1
(1.1)
A 		30.3
(3)
A 		3.6
(-3)
A 		30.5
(3)
A 		27
B 7.6
(2.6)
A 		5.4
(-1.5)
A 		5.8
(-0.8)
A 		7.8
(3)
A 		4.6
(-3)
A 		6.3
(0.2)
A 		3
C 18.1
(0.7)
A 		27.4
(3)
A 		7.2
(-2.1)
A 		3.6
(-3)
A 		5.9
(-2.4)
A 		24.5
(2.3)
A 		24
avr 10.9
(-0.6) 		14.6
(0.8) 		11.7
(-0.3) 		13.9
(0.5) 		4.7
(-3) 		20.4
(3) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 2.2
(3)
A 		0.9
(-3)
A 		1.6
(0.2)
A 		1.5
(-0.2)
A 		1
B 7.6
(3)
A 		6.9
(2.3)
A 		3.8
(-0.6)
A 		1.3
(-3)
A 		6
C 6
(1.2)
A 		6.8
(3)
A 		5.7
(0.6)
A 		4.1
(-3)
A 		3
avr 5.3
(3) 		4.9
(2.2) 		3.7
(-0.2) 		2.3
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 1.3
(-2.8)
A 		3.9
(-0.5)
A 		4.8
(0.4)
A 		7.7
(3)
A 		1.1
(-3)
A 		7.4
(2.7)
A 		7
B 2.7
(3)
A 		1.8
(-1.2)
A 		1.4
(-3)
A 		2.1
(0.2)
A 		1.9
(-0.7)
A 		2.4
(1.6)
A 		1
C 6.7
(1.7)
A 		8.4
(3)
A 		1.8
(-2.1)
A 		0.7
(-3)
A 		1.9
(-2.1)
A 		8.2
(2.8)
A 		8
avr 3.6
(-0.3) 		4.7
(1.2) 		2.7
(-1.5) 		3.5
(-0.4) 		1.6
(-3) 		6
(3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185766_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15074
Sequence Type Exemplar sequence
Representative Public ID C02A12.3 NCBI
Target Description C02A12.3 /REP_DB=WormBase Gene ID /WP=CE07827 /TR=O16200 /GB=AAB65266.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026190(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026190 NCBI Caenorhabditis elegans Serpentine Receptor, class BC (class B-like) family member (srbc-31) (srbc-31) mRNA, complete cds. 11/11 None
GENEFINDER00000023224 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3476036:3477422:-1 11/11 None
C02A12.9 ENSEMBL cdna:known chromosome:CEL140:V:3476231:3477422:-1 gene:C02A12.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000023217 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3476230-3480098(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srbc-31
Ensembl C02A12.9
Entrez Gene 3565628 Entrez gene
SwissProt Q5F4V3 EMBL-EBI
WormBase CE38029 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAW88419 Serpentine receptor, class bc (class b-like) protein 31 [Caenorhabditis elegans] ref|NP_001021361.1| Serpentine Receptor, class BC (class B-like) family member (srbc-31) [Caenorhabditis elegans] 1.0E-150
blast T03855 hypothetical protein C02A12.3 - Caenorhabditis elegans 1.0E-150
blast AAW88419 Serpentine receptor, class bc (class b-like) protein 31 [Caenorhabditis elegans] ref|NP_001021361.1| Serpentine Receptor, class BC (class B-like) family member (srbc-31) [Caenorhabditis elegans] 1.0E-114
blast T03855 hypothetical protein C02A12.3 - Caenorhabditis elegans 1.0E-114
blast AAW88414 Serpentine receptor, class bc (class b-like) protein 30 [Caenorhabditis elegans] ref|NP_503970.2| Serpentine Receptor, class BC (class B-like) family member (srbc-30) [Caenorhabditis elegans] 1.0E-101
blast AAW88414 Serpentine receptor, class bc (class b-like) protein 30 [Caenorhabditis elegans] ref|NP_503970.2| Serpentine Receptor, class BC (class B-like) family member (srbc-30) [Caenorhabditis elegans] 3.0E-76
Protein Domains
Database ID Description E-Value
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 2.7E-114
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 1.9E-47
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 2.8E-38
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001021361.1 7 4-26,46-68,83-105,126-145,178-200,221-243,253-275
C02A12.9 7 4-26,46-68,83-105,126-145,178-200,221-243,253-275
GENEFINDER00000023224 7 4-23,44-66,81-103,115-137,142-162,183-205,215-237
Sequence
Target Sequence 
>C. ELEGANS:185766_AT
gttctatactcgcacttgcaattgctgcagaacgagcgactgcggtttgcttgccaatac
tgtacaggactgttaatctgaaaattccgaatcttttgatccttcttgttgccatagcat
acggtcttttcgaggatgttgttctatttaagttttgtgaattcaatgtgaactcaattc
ctgatacatgtaagcagtttggatgtgcaattaacaaatgcttcttcagctattttatgc
tccatcgatgtattgtattttccatcaacatttgtgtttctatagttctatccgtcaaat
tactcttctggaatcggaaacaatcacatcaacacaaaaacaataataataataaacttt
caaaggcgaatcgtcttgcattactagacacctgtacagtcttcctattcgacttcattc
cagttctctgtggcaacatgtggcctcaatatttctcaggtgaaaatctcggtcccttca
ccgtcgtaatgaaagtcacaggatgtgccattgaatcaattgttgtctcatgtctctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCTATACTCGCACTTGCAATTGC 184 443 1103 Antisense
AGAACGAGCGACTGCGGTTTGCTTG 684 73 1131 Antisense
GCGGTTTGCTTGCCAATACTGTACA 266 293 1144 Antisense
GCCATAGCATACGGTCTTTTCGAGG 136 281 1213 Antisense
GTTCTATCCGTCAAATTACTCTTCT 9 445 1387 Antisense
AAGGCGAATCGTCTTGCATTACTAG 382 161 1465 Antisense
AGACACCTGTACAGTCTTCCTATTC 96 73 1488 Antisense
ACTTCATTCCAGTTCTCTGTGGCAA 565 103 1514 Antisense
GCAACATGTGGCCTCAATATTTCTC 562 319 1535 Antisense
CTCAGGTGAAAATCTCGGTCCCTTC 459 203 1557 Antisense
AATCAATTGTTGTCTCATGTCTCTT 690 171 1616 Antisense
Sequence Source Affymetrix Proprietary Database