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[185765_at]

Description H11E01.3 /REP_DB=WormBase Gene ID /WP=CE17972 /TR=O61802 /GB=AAC17017.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 40      6grp_high1_10_10 > 04      4grp_high_8_8 > 43      6grp_highest_nonorm > 60      6grp_total > 15      4grp_total > 52      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 267
1 2 3 4 range
A 437.2
(3)
P 		369
(0.9)
P 		333.8
(-0.2)
P 		245.7
(-3)
P 		192
B 416
(2.6)
P 		430.1
(3)
P 		375
(1.4)
P 		229.5
(-3)
P 		201
C 388.1
(1.9)
P 		436.6
(3)
P 		345.1
(0.9)
P 		170.6
(-3)
A 		266
avr 413.8
(3) 		411.9
(2.9) 		351.3
(1.1) 		215.3
(-3) 		199

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 505
1 2 3 4 5 6 range
A 466
(2.6)
P 		485.5
(3)
P 		222.5
(-3)
P 		280.8
(-1.7)
P 		240.2
(-2.6)
P 		264.6
(-2)
P 		263
B 447.2
(3)
P 		368.7
(1.2)
P 		360.8
(1.1)
P 		309.5
(-0.1)
P 		185.3
(-2.9)
P 		181.2
(-3)
P 		266
C 644.5
(3)
P 		407
(0.2)
P 		488.3
(1.1)
P 		183.9
(-2.5)
P 		338.8
(-0.6)
P 		139.2
(-3)
P 		505
avr 519.2
(3) 		420.4
(1.2) 		357.2
(0) 		258.1
(-1.8) 		254.8
(-1.9) 		195
(-3) 		324
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 130
1 2 3 4 range
A 159.2
(3)
P 		80.1
(-0.9)
P 		87.3
(-0.5)
P 		36
(-3)
P 		123
B 132.7
(3)
P 		106.2
(1.1)
P 		86.9
(-0.3)
P 		48.9
(-3)
P 		84
C 128.5
(3)
P 		125.5
(2.8)
P 		120.3
(2.5)
P 		28.8
(-3)
A 		100
avr 140.1
(3) 		103.9
(0.9) 		98.2
(0.5) 		37.9
(-3) 		102

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 202
1 2 3 4 5 6 range
A 85.9
(-1.2)
P 		172.7
(3)
P 		48.5
(-3)
P 		71.2
(-1.9)
P 		72.5
(-1.8)
P 		64.4
(-2.2)
P 		124
B 155.6
(3)
P 		122.7
(0.8)
P 		87.6
(-1.6)
P 		82
(-2)
P 		75.3
(-2.5)
P 		67.6
(-3)
P 		88
C 238.9
(3)
P 		124.2
(-0.4)
P 		124.3
(-0.4)
P 		37
(-3)
P 		109.6
(-0.8)
P 		46.6
(-2.7)
P 		202
avr 160.1
(3) 		139.9
(1.8) 		86.8
(-1.4) 		63.4
(-2.8) 		85.8
(-1.4) 		59.5
(-3) 		101
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185765_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18304
Sequence Type Exemplar sequence
Representative Public ID H11E01.3 NCBI
Target Description H11E01.3 /REP_DB=WormBase Gene ID /WP=CE17972 /TR=O61802 /GB=AAC17017.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075898(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075898 NCBI Caenorhabditis elegans H11E01.3 (H11E01.3) mRNA, complete cds. 11/11 None
GENEFINDER00000030754 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1610108:1618570:1 11/11 None
SNAP00000030749 ENSEMBL cdna:SNAP chromosome:CEL140:X:1613179:1618570:1 11/11 None
H11E01.3 ENSEMBL cdna:known chromosome:CEL140:X:1610303:1619134:1 gene:H11E01.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1610107-1618570(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl H11E01.3
Entrez Gene 180495 Entrez gene
SwissProt O61802 EMBL-EBI
WormBase CE30442 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC17017 Hypothetical protein H11E01.3 [Caenorhabditis elegans] ref|NP_508299.2| H11E01.3 [Caenorhabditis elegans] 0.0
blast CAE70008 Hypothetical protein CBG16422 [Caenorhabditis briggsae] 0.0
blast CAE70008 Hypothetical protein CBG16422 [Caenorhabditis briggsae] 2.0E-94
blast CAE64691 Hypothetical protein CBG09473 [Caenorhabditis briggsae] 4.0E-15
blast CAE64691 Hypothetical protein CBG09473 [Caenorhabditis briggsae] 5.0E-15
Sequence
Target Sequence 
>C. ELEGANS:185765_AT
gacgctatgatgacctcaatctaccaaccgggctcagatacggagaccagggagtgggat
gagggagagcatcacgtgaaggaatcgacaactcactccgagcacaccgatggtaatact
cacacgtcggtccaagaaaccatcactactatcactgacaatggccatgacgctgacaat
atctccactgactcattggtcattcatgaacccgccgctgacaatcaaatgactcaatcc
atctatcaaccacatagtgacaatgatgatgatgatgacaaggttacggagaaggagtgg
gatgagggcaacaagcatgttcacgaaatcaccgaagagcacactgatgagtcgggaaaa
cactttacggagactgtcaccaccactaccactacggttatcaaatcaggagatgatatg
aagaacaacaatgacgaggaagatggaagtgatgaggagcgggataaaataattgaagaa
gagggagaacacggctcgaacggcaacctggtccgtgaaaccatcaccaccacaacccac
accgtaacctccggaggtcttccagaggg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGCTATGATGACCTCAATCTACC 689 379 3928 Antisense
TCAATCTACCAACCGGGCTCAGATA 529 633 3943 Antisense
GAAGGAATCGACAACTCACTCCGAG 614 333 4005 Antisense
TCACTCCGAGCACACCGATGGTAAT 328 623 4020 Antisense
TAATACTCACACGTCGGTCCAAGAA 395 633 4041 Antisense
GAAACCATCACTACTATCACTGACA 531 357 4063 Antisense
CATGACGCTGACAATATCTCCACTG 663 209 4093 Antisense
ATGACTCAATCCATCTATCAACCAC 364 45 4156 Antisense
ACTTTACGGAGACTGTCACCACCAC 603 101 4289 Antisense
CTCGAACGGCAACCTGGTCCGTGAA 181 227 4422 Antisense
TAACCTCCGGAGGTCTTCCAGAGGG 306 637 4472 Antisense
Sequence Source Affymetrix Proprietary Database