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[185764_s_at]

Description F33D4.6B /REP_DB=WormBase Gene ID /WP=CE17037 /TR=O44189 /GB=AAB88379.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 08      6grp_high1_10_10 > 80      6grp_highest_nonorm > 53      6grp_total > 82      4grp_total > 48      6grp_high1_sub > 02_03_04_05      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1574
1 2 3 4 range
A 79.2
(-3)
A 		1129.6
(1.1)
P 		1612.1
(3)
P 		103.3
(-2.9)
A 		1533
B 37.7
(-3)
A 		1194.2
(1.5)
P 		1567.4
(3)
P 		57.3
(-2.9)
A 		1530
C 83.1
(-3)
A 		1034.5
(0.8)
P 		1604.6
(3)
P 		194.9
(-2.6)
P 		1522
avr 66.7
(-3) 		1119.4
(1.1) 		1594.7
(3) 		118.5
(-2.8) 		1528

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1719
1 2 3 4 5 6 range
A 122.7
(-3)
P 		1265.1
(1)
P 		796.2
(-0.6)
P 		1834.3
(3)
P 		1232
(0.9)
P 		309.2
(-2.3)
P 		1712
B 115.3
(-3)
P 		1058.8
(1)
P 		798.9
(-0.1)
P 		1547.3
(3)
P 		1249.4
(1.8)
P 		360.1
(-2)
P 		1432
C 189.5
(-3)
P 		1195.1
(1.6)
P 		1132.7
(1.3)
P 		1347.7
(2.3)
P 		1506.8
(3)
P 		341.5
(-2.3)
P 		1317
avr 142.5
(-3) 		1173
(1.3) 		909.3
(0.2) 		1576.4
(3) 		1329.4
(2) 		336.9
(-2.2) 		1434
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 547
1 2 3 4 range
A 28.8
(-2.8)
A 		245.2
(0.4)
P 		421.4
(3)
P 		15.1
(-3)
A 		406
B 12
(-3)
A 		294.9
(1.8)
P 		363.2
(3)
P 		12.2
(-3)
A 		351
C 27.5
(-3)
A 		297.4
(0)
P 		559.2
(3)
P 		32.9
(-2.9)
P 		532
avr 22.8
(-3) 		279.2
(0.6) 		447.9
(3) 		20.1
(-3) 		428

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 485
1 2 3 4 5 6 range
A 22.6
(-3)
P 		449.9
(2.8)
P 		173.4
(-1)
P 		465.2
(3)
P 		371.8
(1.7)
P 		75.3
(-2.3)
P 		443
B 40.1
(-3)
P 		352.4
(1)
P 		194
(-1)
P 		409.8
(1.7)
P 		507.6
(3)
P 		134.3
(-1.8)
P 		468
C 70.2
(-3)
P 		364.7
(1.2)
P 		288.3
(0.1)
P 		271
(-0.1)
P 		487.6
(3)
P 		114.3
(-2.4)
P 		417
avr 44.3
(-3) 		389
(2) 		218.6
(-0.5) 		382
(1.9) 		455.7
(3) 		108
(-2.1) 		411
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185764_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9875
Sequence Type Exemplar sequence
Representative Public ID F33D4.6B NCBI
Target Description F33D4.6B /REP_DB=WormBase Gene ID /WP=CE17037 /TR=O44189 /GB=AAB88379.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068859(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068859 NCBI Caenorhabditis elegans F33D4.6b (F33D4.6) mRNA, complete cds. 11/11 A 
F33D4.6b ENSEMBL cdna:known chromosome:CEL140:IV:7714157:7717993:-1 gene:F33D4.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
177552 2 1 NM_068859 185764_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7714330-7717999(-) 94.95 100.0
Public Domain and Genome References
Ensembl F33D4.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB88379 Hypothetical protein F33D4.6b [Caenorhabditis elegans] ref|NP_501260.2| F33D4.6b [Caenorhabditis elegans] 0.0
blast AAB88378 Hypothetical protein F33D4.6a [Caenorhabditis elegans] ref|NP_501261.2| F33D4.6a [Caenorhabditis elegans] 1.0E-142
blast CAE61947 Hypothetical protein CBG05945 [Caenorhabditis briggsae] 1.0E-113
Sequence
Target Sequence 
>C. ELEGANS:185764_S_AT
ccccaccatccgaagagtttgctgagcaattcgatggagttgatgaggttcaagagagcc
caaaaagacaggaaacaacccaacaagaagttcaaaatgatactccaatgaatgatgcta
tcgaacagagaagcagcaaggttcagatgttgacaaaagagcaggaagaagaacttttga
ataaggaggttagaaagagagttatgaagagaattcgtctctcaaaaatgaagactacaa
ccacaacaactactactgaagctccaacaactacaccagaagaagaagaggaagaagttg
tgacagctgccgtggaacaggaagaggaagatgatgttattgaagcagaagagttagttg
aagatgaagaagaagatgtaacaaccaccaccaccactgaagctccagttacacgtgctc
aacgtgtcaagaaaaacaaaaagagagctgttgtgacaaagcatcaatgcttgaaccttc
gtagcttcgcacgtcaattcttgtttgataccgttgaagagttcgcaaaagagcactgtt
actttattgagaactattatccagcactaacatgtgctcgttctcatgcttatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCCCACCATCCGAAGAGTTTGCTGA 87 263 1403 Antisense
GATGAGGTTCAAGAGAGCCCAAAAA 302 407 1444 Antisense
GAAGCAGCAAGGTTCAGATGTTGAC 345 341 1532 Antisense
AACAACTACTACTGAAGCTCCAACA 431 135 1647 Antisense
AGAAGTTGTGACAGCTGCCGTGGAA 388 75 1695 Antisense
TGAAGCTCCAGTTACACGTGCTCAA 688 573 1800 Antisense
AATGCTTGAACCTTCGTAGCTTCGC 137 167 1868 Antisense
TAGCTTCGCACGTCAATTCTTGTTT 347 647 1884 Antisense
GTTTGATACCGTTGAAGAGTTCGCA 648 451 1905 Antisense
GAACTATTATCCAGCACTAACATGT 124 351 1953 Antisense
ACATGTGCTCGTTCTCATGCTTATG 494 107 1972 Antisense
Sequence Source Affymetrix Proprietary Database