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[185763_at]

Description Y102A5C.2 /REP_DB=WormBase Gene ID /WP=CE19288 /TR=Q9XX92 /GB=CAA20943.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 86      4grp_total > 11      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 19.7
(-2.3)
A 		17.2
(-2.5)
A 		11.2
(-3)
A 		81.8
(3)
A 		71
B 14.7
(-2.4)
A 		18
(-2)
A 		8.4
(-3)
A 		67.3
(3)
A 		59
C 9.6
(-3)
A 		17.3
(-1.2)
A 		9.5
(-3)
A 		35.5
(3)
A 		26
avr 14.7
(-2.4) 		17.5
(-2.1) 		9.7
(-3) 		61.5
(3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 160
1 2 3 4 5 6 range
A 8.3
(-3)
A 		21.7
(-2.3)
A 		10.3
(-2.9)
A 		52.9
(-0.7)
A 		54.3
(-0.6)
A 		123
(3)
A 		115
B 19.9
(-2.6)
A 		10.9
(-3)
A 		10.2
(-3)
A 		30.9
(-2.2)
A 		76.8
(-0.3)
A 		156.9
(3)
P 		147
C 34.3
(-2.2)
A 		13.3
(-3)
A 		25.5
(-2.5)
A 		119.4
(1.1)
A 		91.7
(0)
A 		168.7
(3)
P 		155
avr 20.8
(-2.8) 		15.3
(-3) 		15.3
(-3) 		67.7
(-0.7) 		74.3
(-0.4) 		149.5
(3) 		134
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 7.2
(-0.2)
A 		3.7
(-2.5)
A 		2.9
(-3)
A 		12
(3)
A 		9
B 4.7
(-1.7)
A 		4.4
(-1.8)
A 		2
(-3)
A 		14.3
(3)
A 		12
C 3.2
(-3)
A 		5
(0.9)
A 		3.3
(-2.8)
A 		6
(3)
A 		3
avr 5
(-1.3) 		4.4
(-1.7) 		2.7
(-3) 		10.8
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 1.5
(-3)
A 		7.7
(-1.7)
A 		2.3
(-2.8)
A 		13.4
(-0.5)
A 		16.4
(0.1)
A 		30
(3)
A 		29
B 6.9
(-2.5)
A 		3.6
(-2.9)
A 		2.5
(-3)
A 		8.2
(-2.4)
A 		31.2
(0.1)
A 		58.5
(3)
P 		56
C 12.7
(-2)
A 		4.1
(-3)
A 		6.5
(-2.7)
A 		24
(-0.7)
A 		29.7
(-0.1)
A 		56.5
(3)
P 		52
avr 7
(-2.6) 		5.1
(-2.8) 		3.8
(-3) 		15.2
(-1.5) 		25.8
(-0) 		48.3
(3) 		45
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185763_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13159
Sequence Type Exemplar sequence
Representative Public ID Y102A5C.2 NCBI
Target Description Y102A5C.2 /REP_DB=WormBase Gene ID /WP=CE19288 /TR=Q9XX92 /GB=CAA20943.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074875(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074875 NCBI Caenorhabditis elegans Y102A5C.2 (Y102A5C.2) mRNA, complete cds. 11/11 None
SNAP00000003141 ENSEMBL cdna:SNAP chromosome:CEL140:V:16921562:16922125:1 9/11 None
GENEFINDER00000003175 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16921360:16922125:1 11/11 None
Y102A5C.2 ENSEMBL cdna:known chromosome:CEL140:V:16921360:16922125:1 gene:Y102A5C.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16921359-16922125(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y102A5C.2
Entrez Gene 190829 Entrez gene
SwissProt Q9XX92 EMBL-EBI
WormBase CE19288 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA20943 Hypothetical protein Y102A5C.2 [Caenorhabditis elegans] ref|NP_507276.1| Y102A5C.2 [Caenorhabditis elegans] 1.0E-98
blast CAA20943 Hypothetical protein Y102A5C.2 [Caenorhabditis elegans] ref|NP_507276.1| Y102A5C.2 [Caenorhabditis elegans] 6.0E-86
Sequence
Target Sequence 
>C. ELEGANS:185763_AT
ttatttgtggttgcgctactgccttattttttactgcggtttctgcgcaccgaaggacac
tagaaagatcatcaaatattggtttttgaccaaaattcttcgtcgaacagttccacgtcc
gcaacttgacggcatagataattctgtgcatcaagatgatcttaatgcgggtgtcgacgc
tgaacgtcaaccggttcctcctggagacgcagttgaaattgaagaaaatcaaaacgacga
agttcgagaagctgctgaaaatcattcgaatcgagaagaagatcagaatgtcgaaaatca
accgattcctcccggagacgcagaaattagggttcaaattgaagatgaaaacggagaaaa
tcaagacaataacatcatagtgatcaatccgccgaatagacaaaacgttgaagctgaacc
ggacgctgagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTATTTGTGGTTGCGCTACTGCCTT 641 679 33 Antisense
GCTACTGCCTTATTTTTTACTGCGG 334 303 47 Antisense
TTTCTGCGCACCGAAGGACACTAGA 440 669 72 Antisense
TTCTTCGTCGAACAGTTCCACGTCC 103 609 128 Antisense
TCCACGTCCGCAACTTGACGGCATA 88 589 144 Antisense
CGACGCTGAACGTCAACCGGTTCCT 606 249 207 Antisense
CGGTTCCTCCTGGAGACGCAGTTGA 500 243 224 Antisense
TGTCGAAAATCAACCGATTCCTCCC 331 553 321 Antisense
GATTCCTCCCGGAGACGCAGAAATT 623 429 336 Antisense
ACATCATAGTGATCAATCCGCCGAA 672 105 404 Antisense
GTTGAAGCTGAACCGGACGCTGAGC 708 437 439 Antisense
Sequence Source Affymetrix Proprietary Database