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[185762_at]

Description F47C10.2 /REP_DB=WormBase Gene ID /WP=CE10658 /TR=O01560 /GB=AAB52269.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 67      4grp_high_8_8 > 05      6grp_total > 68      4grp_total > 03      6grp_high1_sub > Da      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 238
1 2 3 4 range
A 87.2
(-1.5)
P 		56.2
(-2.4)
P 		35.1
(-3)
A 		248.8
(3)
P 		214
B 106.7
(-1.5)
P 		79.1
(-2.5)
P 		63.3
(-3)
P 		236.3
(3)
P 		173
C 75.1
(-3)
P 		78
(-2.9)
P 		81.1
(-2.8)
P 		273.3
(3)
P 		198
avr 89.7
(-2.1) 		71.1
(-2.6) 		59.8
(-3) 		252.8
(3) 		193

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 135
1 2 3 4 5 6 range
A 73.6
(0)
M 		27.5
(-3)
A 		59.1
(-0.9)
P 		43.5
(-1.9)
A 		46.6
(-1.7)
M 		118.2
(3)
P 		91
B 58.7
(-1.7)
P 		64.2
(-1.5)
P 		32
(-3)
P 		53.9
(-2)
P 		36
(-2.8)
P 		158.3
(3)
P 		126
C 52.2
(-1.2)
P 		42.2
(-1.8)
P 		23.7
(-3)
A 		51.3
(-1.3)
P 		48.9
(-1.4)
P 		118.5
(3)
P 		95
avr 61.5
(-1.5) 		44.6
(-2.6) 		38.3
(-3) 		49.6
(-2.3) 		43.8
(-2.6) 		131.7
(3) 		93
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 31.7
(2)
P 		12.2
(-2.3)
P 		9.2
(-3)
A 		36.4
(3)
P 		27
B 34
(0.2)
P 		19.5
(-2.2)
P 		14.7
(-3)
P 		50.4
(3)
P 		36
C 24.9
(-2.4)
P 		22.4
(-3)
P 		28.3
(-1.5)
P 		46.1
(3)
P 		24
avr 30.2
(-0.1) 		18
(-2.9) 		17.4
(-3) 		44.3
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 13.6
(-1.8)
M 		9.8
(-3)
A 		12.9
(-2)
P 		11
(-2.6)
A 		14.1
(-1.6)
M 		28.8
(3)
P 		19
B 20.4
(-1.5)
P 		21.4
(-1.4)
P 		7.8
(-3)
P 		14.3
(-2.2)
P 		14.6
(-2.2)
P 		59
(3)
P 		51
C 19.3
(-0.6)
P 		12.9
(-1.8)
P 		6
(-3)
A 		10.3
(-2.2)
P 		15.8
(-1.3)
P 		39.7
(3)
P 		34
avr 17.8
(-1.4) 		14.7
(-2) 		8.9
(-3) 		11.9
(-2.5) 		14.8
(-1.9) 		42.5
(3) 		34
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185762_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14944
Sequence Type Exemplar sequence
Representative Public ID F47C10.2 NCBI
Target Description F47C10.2 /REP_DB=WormBase Gene ID /WP=CE10658 /TR=O01560 /GB=AAB52269.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071661(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071661 NCBI Caenorhabditis elegans F47C10.2 (F47C10.2) mRNA, complete cds. 11/11 None
SNAP00000021956 ENSEMBL cdna:SNAP chromosome:CEL140:V:3849940:3850541:-1 11/11 None
GENEFINDER00000021959 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3849940:3850541:-1 11/11 None
F47C10.2 ENSEMBL cdna:known chromosome:CEL140:V:3849905:3851612:-1 gene:F47C10.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000026415 1/11 Cross Hyb Matching Probes None
C04H5.9 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3849939-3850541(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F47C10.2
Entrez Gene 185908 Entrez gene
SwissProt O01560 EMBL-EBI
WormBase CE10658 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB52269 Hypothetical protein F47C10.2 [Caenorhabditis elegans] ref|NP_504062.1| F47C10.2 [Caenorhabditis elegans] 2.0E-89
blast CAB05524 Hypothetical protein F57C2.2 [Caenorhabditis elegans] ref|NP_497015.1| F57C2.2 [Caenorhabditis elegans] 1.0E-59
blast CAB05523 Hypothetical protein F57C2.1 [Caenorhabditis elegans] ref|NP_497016.1| F57C2.1 [Caenorhabditis elegans] 1.0E-59
Protein Domains
Database ID Description E-Value
Pfam IPR000210 EMBL-EBI BTB/POZ domain 2.4E-31
Sequence
Target Sequence 
>C. ELEGANS:185762_AT
tttcatttcactctacttacttcagtgctctattctcatccaattacaaagaaggtcaaa
tgtcagagattgagcttaaagatgtgtcttacgaaaactttgctcttcttctaggaacta
tctatccgaatacaatatttccaaacgataaaaccgtgtataagattctggatatggcgg
accgatttattcttccgtctgcaatatggcacgtggagtatcatctgctcaataataccc
gaatcagaaatgaaatgctgatgtggttggctgacagatatggaatgacgaaacttctcg
aaaaatcgattcgtcggatgaattcagttgagagtgcgaagaagttgaaggcttcacagg
aatactccaaactttccaatgactc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTCATTTCACTCTACTTACTTCAG 250 673 89 Antisense
GATGTGTCTTACGAAAACTTTGCTC 332 409 169 Antisense
AACTTTGCTCTTCTTCTAGGAACTA 311 139 184 Antisense
AGATTCTGGATATGGCGGACCGATT 518 61 251 Antisense
GGCGGACCGATTTATTCTTCCGTCT 235 539 264 Antisense
TCTTCCGTCTGCAATATGGCACGTG 556 617 279 Antisense
GGCACGTGGAGTATCATCTGCTCAA 410 535 296 Antisense
TCATCTGCTCAATAATACCCGAATC 147 621 309 Antisense
GAAATGCTGATGTGGTTGGCTGACA 30 363 340 Antisense
TGAAGGCTTCACAGGAATACTCCAA 549 573 434 Antisense
AATACTCCAAACTTTCCAATGACTC 156 173 449 Antisense
Sequence Source Affymetrix Proprietary Database