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[185761_s_at] --- /// --- /// ---

Description K08D10.1 /REP_DB=WormBase Gene ID /WP=CE07353 /TR=Q21325 /GB=AAA98035.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 55      6grp_high1_10_10 > 55      4grp_highest_8_8 > 62      4grp_high_8_8 > 18      6grp_highest_nonorm > 81      6grp_total > 46      4grp_total > 30      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 229
1 2 3 4 range
A 341.2
(3)
P 		193.5
(-2.5)
P 		178.8
(-3)
P 		305.9
(1.7)
P 		162
B 292.8
(3)
P 		253.9
(1.4)
P 		151.1
(-3)
P 		238.7
(0.7)
P 		142
C 379.7
(3)
P 		232
(-1.6)
P 		186.4
(-3)
P 		374
(2.8)
P 		193
avr 337.9
(3) 		226.5
(-1) 		172.1
(-3) 		306.2
(1.9) 		166

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 190
1 2 3 4 5 6 range
A 298.6
(-0.4)
P 		333.1
(0.7)
P 		280.9
(-0.9)
P 		302.8
(-0.3)
P 		215.7
(-3)
P 		406
(3)
P 		190
B 328.2
(3)
P 		294.6
(0.9)
P 		232.2
(-3)
P 		290.8
(0.7)
P 		235.4
(-2.8)
P 		281.7
(0.1)
P 		96
C 237
(-2.1)
P 		303.8
(0.9)
P 		351.1
(3)
P 		290.2
(0.3)
P 		217.6
(-3)
P 		306.4
(1)
P 		134
avr 287.9
(0.6) 		310.5
(1.8) 		288.1
(0.6) 		294.6
(1) 		222.9
(-3) 		331.4
(3) 		109
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 124.2
(3)
P 		42
(-3)
P 		46.7
(-2.7)
P 		44.8
(-2.8)
P 		82
B 93.4
(3)
P 		62.7
(-0.2)
P 		35
(-3)
P 		50.9
(-1.4)
P 		58
C 125.7
(3)
P 		66.7
(-2.7)
P 		65
(-2.8)
P 		63.1
(-3)
P 		63
avr 114.4
(3) 		57.1
(-2.2) 		48.9
(-3) 		52.9
(-2.6) 		66

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 55
(-3)
P 		118.5
(3)
P 		61.2
(-2.4)
P 		76.8
(-0.9)
P 		65.1
(-2)
P 		98.8
(1.1)
P 		64
B 114.2
(3)
P 		98.1
(1.3)
P 		56.4
(-3)
P 		77
(-0.9)
P 		95.7
(1.1)
P 		105
(2)
P 		58
C 87.8
(1)
P 		92.7
(1.7)
P 		89.3
(1.2)
P 		58.4
(-3)
P 		70.4
(-1.4)
P 		102.6
(3)
P 		44
avr 85.7
(-0.1) 		103.1
(3) 		69
(-3) 		70.7
(-2.7) 		77.1
(-1.6) 		102.1
(2.8) 		34
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185761_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10748
Sequence Type Exemplar sequence
Representative Public ID K08D10.1 NCBI
Target Description K08D10.1 /REP_DB=WormBase Gene ID /WP=CE07353 /TR=Q21325 /GB=AAA98035.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068106(11), NM_058520(11), NM_068220(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068106 NCBI Caenorhabditis elegans K08D10.1 (K08D10.1) mRNA, complete cds. 11/11 None
NM_058520 NCBI Caenorhabditis elegans Y20F4.5 (Y20F4.5) mRNA, complete cds. 11/11 None
NM_068220 NCBI Caenorhabditis elegans K08F11.2 (K08F11.2) mRNA, complete cds. 11/11 None
GENEFINDER00000004343 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:2050999:2053703:-1 10/11 None
SNAP00000004338 ENSEMBL cdna:SNAP chromosome:CEL140:I:2051034:2052818:-1 10/11 None
SNAP00000001910 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4717047:4719737:1 10/11 None
GENEFINDER00000001915 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4717047:4725304:1 11/11 None
SNAP00000009688 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4181295:4183985:1 10/11 None
GENEFINDER00000009690 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4181295:4185007:1 11/11 None
Y20F4.5 ENSEMBL cdna:known chromosome:CEL140:I:2050816:2053703:-1 gene:Y20F4.5 11/11 None
K08D10.1 ENSEMBL cdna:known chromosome:CEL140:IV:4181295:4184455:1 gene:K08D10.1 11/11 None
K08F11.2 ENSEMBL cdna:known chromosome:CEL140:IV:4716173:4720207:1 gene:K08F11.2 11/11 None
K03D7.1 ENSEMBL cdna:pseudogene chromosome:CEL140:V:17517382:17521871:1 gene:K03D7.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000027361 2/11 Cross Hyb Matching Probes None
SNAP00000027362 6/11 Cross Hyb Matching Probes None
GENEFINDER00000027363 6/11 Cross Hyb Matching Probes None
GENEFINDER00000027368 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4179754-4184259(+) 100.0 100.0
chrIV:4717033-4720011(+) 95.76 95.76
chrV:17518291-17521277(+) 94.91 94.91
chrI:2050815-2053721(-) 92.63 92.63
Public Domain and Genome References
Gene Title


Ensembl Y20F4.5
K08D10.1
K08F11.2
K03D7.1
Entrez Gene 177183 Entrez gene
177239 Entrez gene
246001 Entrez gene
SwissProt P83384 EMBL-EBI
P83385 EMBL-EBI
Q95XA4 EMBL-EBI
WormBase CE28596 Wormbase
CE28599 Wormbase
CE29368 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA98035 Hypothetical protein K08D10.1 [Caenorhabditis elegans] ref|NP_500507.1| K08D10.1 [Caenorhabditis elegans] 0.0
blast AAB09160 Hypothetical protein K08F11.2 [Caenorhabditis elegans] ref|NP_500621.1| K08F11.2 [Caenorhabditis elegans] 0.0
blast NP_490921 Y20F4.5 [Caenorhabditis elegans] gb|AAL00865.1| Hypothetical protein Y20F4.5 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR009689 EMBL-EBI Protein of unknown function DUF1280 1.0E-126
Pfam IPR009689 EMBL-EBI Protein of unknown function DUF1280 2.3E-115
Pfam IPR009689 EMBL-EBI Protein of unknown function DUF1280 1.6E-124
Pfam IPR009689 EMBL-EBI Protein of unknown function DUF1280 1.6E-124
Sequence
Target Sequence 
>C. ELEGANS:185761_S_AT
gacgagacgctggatggacttgctggtggatatcttaaacaatttgagaatgatctggaa
gaagttggtgcaacacgccgagcgtggtttcaaatgtacactggaaatcacacgaagctg
attttgtctgagaaaggtgtcacagctgcattcaaaaatctgaaaaaccacatgactccg
atgcttctgaatgtcaagaacgcgatgagcaggctgtccaaaatcatgtcattgtcggcc
aatcgattgctctctgacgatgacatcagcgaattggatgagtcgatgaaggaattcgtt
gaattcctacaagctgcccacccagaagaatcaatcactcaaaaattgcatgtcctggtt
gctcacgtagtagaagtcgcaaaaacggaaaggagctgggaaggctttcggagcaaggaa
tcgaatcgcttcatgccgttttcaatcgcctcgaaagacgcttccactcggacgcctcgt
cttcccaataaaccacccagcgctctccctcacacaattctgaacctttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGAGACGCTGGATGGACTTGCTG 427 379 2191 Antisense
ACGCCGAGCGTGGTTTCAAATGTAC 404 91 2265 Antisense
GAAAGGTGTCACAGCTGCATTCAAA 629 359 2322 Antisense
AAAACCACATGACTCCGATGCTTCT 34 133 2354 Antisense
GAACGCGATGAGCAGGCTGTCCAAA 191 347 2388 Antisense
GTCATTGTCGGCCAATCGATTGCTC 258 467 2418 Antisense
TCGATTGCTCTCTGACGATGACATC 82 603 2433 Antisense
TCGTTGAATTCCTACAAGCTGCCCA 493 603 2486 Antisense
CTGCCCACCCAGAAGAATCAATCAC 287 237 2504 Antisense
TGTCCTGGTTGCTCACGTAGTAGAA 348 557 2541 Antisense
TCCCTCACACAATTCTGAACCTTTT 200 597 2696 Antisense
Sequence Source Affymetrix Proprietary Database