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[185760_s_at]

Description Y52D5A.1 /REP_DB=WormBase Gene ID /WP=CE26154 /TR=Q9N4S5 /GB=AAF60751.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 85      4grp_total > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 1.3
(-2.5)
A 		1.3
(-2.5)
A 		0.8
(-3)
A 		7
(3)
A 		6
B 2.1
(-3)
A 		2.8
(-1.2)
A 		2.9
(-0.9)
A 		4.4
(3)
A 		2
C 1.8
(-3)
A 		1.6
(-3)
A 		2.2
(-2.9)
A 		28.8
(3)
A 		27
avr 1.7
(-3) 		1.9
(-2.9) 		2
(-2.8) 		13.4
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 2
(-2.4)
A 		1
(-3)
A 		1.8
(-2.5)
A 		10.5
(3)
A 		3.2
(-1.6)
A 		8.4
(1.7)
A 		10
B 2.3
(-2.6)
A 		0.6
(-3)
A 		2.8
(-2.5)
A 		1.5
(-2.8)
A 		11.4
(-0.6)
A 		27.3
(3)
A 		27
C 2.2
(-2.9)
A 		15.9
(0.1)
A 		1.6
(-3)
A 		28.9
(3)
A 		2
(-2.9)
A 		13.4
(-0.4)
A 		27
avr 2.2
(-3) 		5.8
(-1.4) 		2.1
(-3) 		13.6
(1.8) 		5.5
(-1.6) 		16.4
(3) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 0.5
(-0.8)
A 		0.3
(-2.3)
A 		0.2
(-3)
A 		1
(3)
A 		1
B 0.7
(-3)
A 		0.7
(-3)
A 		0.7
(-3)
A 		0.9
(3)
A 		0
C 0.6
(-2.9)
A 		0.5
(-3)
A 		0.8
(-2.6)
A 		4.9
(3)
A 		4
avr 0.6
(-2.7) 		0.5
(-3) 		0.6
(-2.7) 		2.3
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 0.4
(-3)
A 		0.4
(-3)
A 		0.4
(-3)
A 		2.7
(3)
A 		1
(-1.4)
A 		2.1
(1.4)
A 		2
B 0.8
(-2.6)
A 		0.2
(-3)
A 		0.7
(-2.7)
A 		0.4
(-2.9)
A 		4.6
(-0.4)
A 		10.2
(3)
A 		10
C 0.8
(-2.6)
A 		4.8
(1.9)
A 		0.4
(-3)
A 		5.8
(3)
A 		0.6
(-2.8)
A 		4.5
(1.6)
A 		5
avr 0.7
(-2.8) 		1.8
(-1.5) 		0.5
(-3) 		3
(-0.1) 		2.1
(-1.1) 		5.6
(3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185760_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10369
Sequence Type Exemplar sequence
Representative Public ID Y52D5A.1 NCBI
Target Description Y52D5A.1 /REP_DB=WormBase Gene ID /WP=CE26154 /TR=Q9N4S5 /GB=AAF60751.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068413(11), NM_067540(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068413 NCBI Caenorhabditis elegans Y52D5A.1 (Y52D5A.1) mRNA, complete cds. 11/11 A 
NM_067540 NCBI Caenorhabditis elegans W03G1.2 (W03G1.2) mRNA, complete cds. 11/11 A 
SNAP00000019801 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5467465:5469030:1 11/11 None
GENEFINDER00000019803 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5466828:5469176:1 11/11 None
SNAP00000041682 ENSEMBL cdna:SNAP chromosome:CEL140:IV:524951:526388:1 11/11 None
GENEFINDER00000041696 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:524697:526388:1 11/11 None
W03G1.2 ENSEMBL cdna:known chromosome:CEL140:IV:524697:526388:1 gene:W03G1.2 11/11 A 
Y52D5A.1 ENSEMBL cdna:known chromosome:CEL140:IV:5465005:5468768:1 gene:Y52D5A.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5466665-5468774(+) 30.6 46.45
Public Domain and Genome References
Gene Title

Ensembl W03G1.2
Y52D5A.1
Entrez Gene 189165 Entrez gene
190184 Entrez gene
SwissProt Q9UAY5 EMBL-EBI
Q9N4S5 EMBL-EBI
WormBase CE17280 Wormbase
CE26154 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60751 Hypothetical protein Y52D5A.1 [Caenorhabditis elegans] ref|NP_500814.1| Y52D5A.1 [Caenorhabditis elegans] 0.0
blast AAD14750 Hypothetical protein W03G1.2 [Caenorhabditis elegans] ref|NP_499941.1| W03G1.2 [Caenorhabditis elegans] 1.0E-146
blast AAD14750 Hypothetical protein W03G1.2 [Caenorhabditis elegans] ref|NP_499941.1| W03G1.2 [Caenorhabditis elegans] 1.0E-141
blast AAF60751 Hypothetical protein Y52D5A.1 [Caenorhabditis elegans] ref|NP_500814.1| Y52D5A.1 [Caenorhabditis elegans] 1.0E-139
blast AAD14750 Hypothetical protein W03G1.2 [Caenorhabditis elegans] ref|NP_499941.1| W03G1.2 [Caenorhabditis elegans] 1.0E-138
blast AAF60751 Hypothetical protein Y52D5A.1 [Caenorhabditis elegans] ref|NP_500814.1| Y52D5A.1 [Caenorhabditis elegans] 1.0E-125
blast AAD14750 Hypothetical protein W03G1.2 [Caenorhabditis elegans] ref|NP_499941.1| W03G1.2 [Caenorhabditis elegans] 1.0E-109
Protein Domains
Database ID Description E-Value
Pfam IPR008569 EMBL-EBI Protein of unknown function DUF851 1.2E-21
Pfam IPR008569 EMBL-EBI Protein of unknown function DUF851 7.6E-20
Pfam IPR008569 EMBL-EBI Protein of unknown function DUF851 1.3E-19
Pfam IPR008569 EMBL-EBI Protein of unknown function DUF851 1.2E-21
Pfam IPR008569 EMBL-EBI Protein of unknown function DUF851 1.7E-20
Pfam IPR008569 EMBL-EBI Protein of unknown function DUF851 9.7E-21
Pfam IPR008569 EMBL-EBI Protein of unknown function DUF851 1.2E-21
Pfam IPR008569 EMBL-EBI Protein of unknown function DUF851 1.2E-21
Pfam IPR008569 EMBL-EBI Protein of unknown function DUF851 9.7E-21
Pfam IPR008569 EMBL-EBI Protein of unknown function DUF851 9.7E-21
Pfam IPR008569 EMBL-EBI Protein of unknown function DUF851 9.7E-21
Pfam IPR008569 EMBL-EBI Protein of unknown function DUF851 3.4E-14
Pfam IPR008569 EMBL-EBI Protein of unknown function DUF851 9.7E-21
Pfam IPR008569 EMBL-EBI Protein of unknown function DUF851 1.7E-20
Pfam IPR008569 EMBL-EBI Protein of unknown function DUF851 9.7E-21
Pfam IPR008569 EMBL-EBI Protein of unknown function DUF851 1.2E-21
Pfam IPR008569 EMBL-EBI Protein of unknown function DUF851 1.3E-19
Pfam IPR008569 EMBL-EBI Protein of unknown function DUF851 4.5E-20
Pfam IPR008569 EMBL-EBI Protein of unknown function DUF851 1.2E-21
Pfam IPR008569 EMBL-EBI Protein of unknown function DUF851 6.5E-15
Pfam IPR008569 EMBL-EBI Protein of unknown function DUF851 4.5E-20
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500814.1 18 10-32,41-63,73-95,104-126,136-158,184-206,216-238,250-271,281-303,312-334,344-366,386-408,418-440,449-471,491-513,539-561,571-593,602-624
Y52D5A.1 18 10-32,41-63,73-95,104-126,136-158,184-206,216-238,250-271,281-303,312-334,344-366,386-408,418-440,449-471,491-513,539-561,571-593,602-624
Sequence
Target Sequence 
>C. ELEGANS:185760_S_AT
acaaggaaaaagcaccggaagctgtgaaagaccatgagattccaaatgcaaatcgaattc
ccggaaccacacggctcaacgagccgaaaaacatcgaggtcacgaatcacgaggtggatg
ataagacgacggagcgagtctataagaagttgagggaaaagaagaagtcgacggcaaaag
cgaagccaatcgatgcgaagagcaagcttctgttggatcgagtgccgaaaaaaccatatc
gattgaagcataagcccgatggtatgatgttatgcgacgagccatccactttctacaaaa
ccaacaatccgaagaagaaagttgagacctctttacttcccgttgaggattcttatgatc
acgttcgaaaattggaggacattaagaaggagccagagcaagatgtgtacaagggtcagg
acgtccccacctgggcagtaaatatagaaccgactgacgaggacatgaaagagaccgacg
aggcgatcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAAGGAAAAAGCACCGGAAGCTGT 200 111 2162 Antisense
AAAACATCGAGGTCACGAATCACGA 577 129 2249 Antisense
GAGGTCACGAATCACGAGGTGGATG 422 403 2257 Antisense
GAGGTGGATGATAAGACGACGGAGC 562 401 2272 Antisense
GACGACGGAGCGAGTCTATAAGAAG 96 379 2286 Antisense
GATCGAGTGCCGAAAAAACCATATC 199 415 2377 Antisense
TCTTTACTTCCCGTTGAGGATTCTT 62 615 2491 Antisense
GAGGATTCTTATGATCACGTTCGAA 576 403 2506 Antisense
AGATGTGTACAAGGGTCAGGACGTC 78 67 2562 Antisense
TGTACAAGGGTCAGGACGTCCCCAC 331 559 2567 Antisense
TGAAAGAGACCGACGAGGCGATCAC 325 573 2627 Antisense
Sequence Source Affymetrix Proprietary Database