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[185759_at]

Description Y52D5A.1 /REP_DB=WormBase Gene ID /WP=CE26154 /TR=Q9N4S5 /GB=AAF60751.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 09      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 0.5
(-3)
A 		2
(-2.4)
A 		4.4
(-1.4)
A 		15.1
(3)
A 		15
B 1.2
(-0)
A 		1.5
(3)
A 		1.3
(1)
A 		0.9
(-3)
A 		1
C 1.6
(-1.3)
A 		2
(-0.5)
A 		0.7
(-3)
A 		3.8
(3)
A 		3
avr 1.1
(-3) 		1.8
(-2.2) 		2.1
(-1.9) 		6.6
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 1.5
(0.2)
A 		0.8
(-3)
A 		1.1
(-1.6)
A 		2.1
(3)
A 		1.9
(2.1)
A 		1.6
(0.7)
A 		1
B 0.8
(3)
A 		0.8
(3)
A 		0.4
(-3)
A 		0.5
(-1.5)
A 		0.6
(-0)
A 		0.5
(-1.5)
A 		0
C 5.3
(3)
A 		2
(-1.2)
A 		1.6
(-1.7)
A 		2.5
(-0.6)
A 		1
(-2.5)
A 		0.6
(-3)
A 		5
avr 2.5
(3) 		1.2
(-1.9) 		1
(-2.6) 		1.7
(-0) 		1.2
(-1.9) 		0.9
(-3) 		2
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 0.2
(-3)
A 		0.4
(-2.4)
A 		1.1
(-0.3)
A 		2.2
(3)
A 		2
B 0.4
(3)
A 		0.4
(3)
A 		0.3
(-0)
A 		0.2
(-3)
A 		0
C 0.5
(1)
A 		0.6
(3)
A 		0.3
(-3)
A 		0.6
(3)
A 		0
avr 0.4
(-3) 		0.5
(-2) 		0.6
(-1) 		1
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 0.3
(-3)
A 		0.3
(-3)
A 		0.3
(-3)
A 		0.5
(1)
A 		0.6
(3)
A 		0.4
(-1)
A 		0
B 0.3
(3)
A 		0.3
(3)
A 		0.1
(-3)
A 		0.1
(-3)
A 		0.2
(0)
A 		0.2
(0)
A 		0
C 2
(3)
A 		0.6
(-1.7)
A 		0.4
(-2.3)
A 		0.5
(-2)
A 		0.3
(-2.7)
A 		0.2
(-3)
A 		2
avr 0.9
(3) 		0.4
(-2) 		0.3
(-3) 		0.4
(-2) 		0.4
(-2) 		0.3
(-3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185759_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10369
Sequence Type Exemplar sequence
Representative Public ID Y52D5A.1 NCBI
Target Description Y52D5A.1 /REP_DB=WormBase Gene ID /WP=CE26154 /TR=Q9N4S5 /GB=AAF60751.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068413(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068413 NCBI Caenorhabditis elegans Y52D5A.1 (Y52D5A.1) mRNA, complete cds. 11/11 A 
SNAP00000019801 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5467465:5469030:1 11/11 None
GENEFINDER00000019803 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5466828:5469176:1 11/11 None
Y52D5A.1 ENSEMBL cdna:known chromosome:CEL140:IV:5465005:5468768:1 gene:Y52D5A.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5466665-5468774(+) 30.6 46.45
Public Domain and Genome References
Gene Title
Ensembl Y52D5A.1
Entrez Gene 190184 Entrez gene
SwissProt Q9N4S5 EMBL-EBI
WormBase CE26154 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60751 Hypothetical protein Y52D5A.1 [Caenorhabditis elegans] ref|NP_500814.1| Y52D5A.1 [Caenorhabditis elegans] 0.0
blast AAF60751 Hypothetical protein Y52D5A.1 [Caenorhabditis elegans] ref|NP_500814.1| Y52D5A.1 [Caenorhabditis elegans] 1.0E-139
blast AAD14750 Hypothetical protein W03G1.2 [Caenorhabditis elegans] ref|NP_499941.1| W03G1.2 [Caenorhabditis elegans] 1.0E-138
blast AAF60751 Hypothetical protein Y52D5A.1 [Caenorhabditis elegans] ref|NP_500814.1| Y52D5A.1 [Caenorhabditis elegans] 1.0E-125
blast AAD14750 Hypothetical protein W03G1.2 [Caenorhabditis elegans] ref|NP_499941.1| W03G1.2 [Caenorhabditis elegans] 1.0E-109
blast NP_498073 C45G9.8 [Caenorhabditis elegans] gb|AAA62551.1| Hypothetical protein C45G9.8 [Caenorhabditis elegans] sp|Q09280|YQI8_CAEEL Hypothetical protein C45G9.8 in chromosome III 2.0E-41
blast AAB37735 Hypothetical protein C01G5.3 [Caenorhabditis elegans] ref|NP_500996.1| C01G5.3 [Caenorhabditis elegans] 1.0E-34
Protein Domains
Database ID Description E-Value
Pfam IPR008569 EMBL-EBI Protein of unknown function DUF851 1.2E-21
Pfam IPR008569 EMBL-EBI Protein of unknown function DUF851 7.6E-20
Pfam IPR008569 EMBL-EBI Protein of unknown function DUF851 1.3E-19
Pfam IPR008569 EMBL-EBI Protein of unknown function DUF851 1.2E-21
Pfam IPR008569 EMBL-EBI Protein of unknown function DUF851 1.7E-20
Pfam IPR008569 EMBL-EBI Protein of unknown function DUF851 9.7E-21
Pfam IPR008569 EMBL-EBI Protein of unknown function DUF851 1.2E-21
Pfam IPR008569 EMBL-EBI Protein of unknown function DUF851 1.2E-21
Pfam IPR008569 EMBL-EBI Protein of unknown function DUF851 9.7E-21
Pfam IPR008569 EMBL-EBI Protein of unknown function DUF851 9.7E-21
Pfam IPR008569 EMBL-EBI Protein of unknown function DUF851 9.7E-21
Pfam IPR008569 EMBL-EBI Protein of unknown function DUF851 3.4E-14
Pfam IPR008569 EMBL-EBI Protein of unknown function DUF851 9.7E-21
Pfam IPR008569 EMBL-EBI Protein of unknown function DUF851 1.7E-20
Pfam IPR008569 EMBL-EBI Protein of unknown function DUF851 9.7E-21
Pfam IPR008569 EMBL-EBI Protein of unknown function DUF851 1.2E-21
Pfam IPR008569 EMBL-EBI Protein of unknown function DUF851 1.3E-19
Pfam IPR008569 EMBL-EBI Protein of unknown function DUF851 4.5E-20
Pfam IPR008569 EMBL-EBI Protein of unknown function DUF851 1.2E-21
Pfam IPR008569 EMBL-EBI Protein of unknown function DUF851 6.5E-15
Pfam IPR008569 EMBL-EBI Protein of unknown function DUF851 4.5E-20
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500814.1 18 10-32,41-63,73-95,104-126,136-158,184-206,216-238,250-271,281-303,312-334,344-366,386-408,418-440,449-471,491-513,539-561,571-593,602-624
Y52D5A.1 18 10-32,41-63,73-95,104-126,136-158,184-206,216-238,250-271,281-303,312-334,344-366,386-408,418-440,449-471,491-513,539-561,571-593,602-624
Sequence
Target Sequence 
>C. ELEGANS:185759_AT
agcaccggaagctgtgaaagaccatgagattccaaatgcaaatcgaattcccggaaccac
acggctcaacgagccgaaaaacatcgaggtcacgaatcacgaggtggatgataagacgac
ggagcgagtctataagaagttgagggaaaagaagaagtcgacggcaaaagcgaagccaat
cgatgcgaagagcaagcttctgttggatcgagtgccgaaaaaaccatatcgattgaagca
taagcccgatggtatgatgttatgcgacgagccatccactttctacaaaaccaacaatcc
gaagaagaaagttgagacctctttacttcccgttgaggattcttatgatcacgttcgaaa
attggaggacattaagaaggagccagagcaagatgtgtacaagggtcaggacgtccccac
ctgggcagtaaatatagaaccgactgacgaggacatgaaagagaccgacgaggcgatcac
ggtgaatactgatcattcggagatgtacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCACCGGAAGCTGTGAAAGACCAT 570 75 2172 Antisense
GAAAGACCATGAGATTCCAAATGCA 372 359 2187 Antisense
ATGCAAATCGAATTCCCGGAACCAC 560 43 2207 Antisense
CGGAACCACACGGCTCAACGAGCCG 540 239 2223 Antisense
GAAGTCGACGGCAAAAGCGAAGCCA 154 337 2325 Antisense
GCGAAGCCAATCGATGCGAAGAGCA 193 289 2341 Antisense
TACAAAACCAACAATCCGAAGAAGA 532 639 2455 Antisense
GAAGAAAGTTGAGACCTCTTTACTT 506 337 2475 Antisense
GAACCGACTGACGAGGACATGAAAG 394 341 2608 Antisense
GACGAGGCGATCACGGTGAATACTG 44 379 2638 Antisense
AATACTGATCATTCGGAGATGTACC 462 171 2656 Antisense
Sequence Source Affymetrix Proprietary Database