[Home] | [Total List]

[185758_at]

Description C14C11.3 /REP_DB=WormBase Gene ID /WP=CE06822 /TR=Q17977 /GB=AAA96105.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 07      6grp_high1_10_10 > 70      4grp_highest_8_8 > 20      4grp_high_8_8 > 31      6grp_highest_nonorm > 74      6grp_total > 30      4grp_total > 32      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 448
1 2 3 4 range
A 592.8
(-3)
P 		730.6
(0.4)
P 		838.5
(3)
P 		772.5
(1.4)
P 		246
B 708.9
(-2.8)
P 		697
(-3)
P 		1040.8
(3)
P 		851.5
(-0.3)
P 		344
C 646.1
(-3)
P 		677.3
(-2.2)
P 		891.4
(3)
P 		872.2
(2.5)
P 		245
avr 649.3
(-3) 		701.6
(-1.9) 		923.6
(3) 		832.1
(1) 		274

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 418
1 2 3 4 5 6 range
A 773
(1.3)
P 		805.5
(1.8)
P 		676.3
(-0.4)
P 		870.9
(3)
P 		658.6
(-0.7)
P 		530.3
(-3)
P 		341
B 749.7
(0.8)
P 		827.3
(3)
P 		779.9
(1.7)
P 		807.2
(2.4)
P 		615.1
(-3)
P 		677.7
(-1.2)
P 		212
C 587.9
(-1.8)
P 		913.8
(2.9)
P 		618.3
(-1.3)
P 		919.7
(3)
P 		501.8
(-3)
P 		680.6
(-0.4)
P 		418
avr 703.5
(-0.6) 		848.9
(2.6) 		691.5
(-0.8) 		865.9
(3) 		591.8
(-3) 		629.5
(-2.2) 		274
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 198
1 2 3 4 range
A 215.8
(2.8)
P 		158.6
(-0.4)
P 		219.2
(3)
P 		113.1
(-3)
P 		106
B 226.1
(1.7)
P 		172.2
(-3)
P 		241.2
(3)
P 		181.5
(-2.2)
P 		69
C 213.9
(-0.6)
P 		194.7
(-1.3)
P 		310.7
(3)
P 		147.1
(-3)
P 		164
avr 218.6
(0.9) 		175.2
(-1.5) 		257
(3) 		147.2
(-3) 		110

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 157
1 2 3 4 5 6 range
A 142.5
(-2.5)
P 		286.5
(3)
P 		147.3
(-2.3)
P 		220.9
(0.5)
P 		198.7
(-0.3)
P 		129.1
(-3)
P 		157
B 260.9
(2)
P 		275.4
(3)
P 		189.4
(-3)
P 		213.8
(-1.3)
P 		249.9
(1.2)
P 		252.7
(1.4)
P 		86
C 217.9
(-0)
P 		278.8
(3)
P 		157.4
(-3)
P 		184.9
(-1.6)
P 		162.4
(-2.8)
P 		227.8
(0.5)
P 		121
avr 207.1
(-0.8) 		280.2
(3) 		164.7
(-3) 		206.5
(-0.8) 		203.7
(-1) 		203.2
(-1) 		116
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185758_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11667
Sequence Type Exemplar sequence
Representative Public ID C14C11.3 NCBI
Target Description C14C11.3 /REP_DB=WormBase Gene ID /WP=CE06822 /TR=Q17977 /GB=AAA96105.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072088(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072088 NCBI Caenorhabditis elegans C14C11.3 (C14C11.3) mRNA, complete cds. 11/11 None
SNAP00000024121 ENSEMBL cdna:SNAP chromosome:CEL140:V:5657560:5661168:1 11/11 None
GENEFINDER00000024132 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5655540:5661168:1 11/11 None
C14C11.3.2 ENSEMBL cdna:known chromosome:CEL140:V:5657042:5661282:1 gene:C14C11.3 11/11 None
C14C11.3.1 ENSEMBL cdna:known chromosome:CEL140:V:5657044:5661282:1 gene:C14C11.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5657610-5661168(+) 94.29 100.0
Public Domain and Genome References
Gene Title
Ensembl C14C11.3
Entrez Gene 178951 Entrez gene
SwissProt Q17977 EMBL-EBI
WormBase CE36785 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
5975 carbohydrate metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4563 beta-N-acetylhexosaminidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA96105 Hypothetical protein C14C11.3 [Caenorhabditis elegans] ref|NP_504489.3| C14C11.3 [Caenorhabditis elegans] 0.0
blast CAE64595 Hypothetical protein CBG09350 [Caenorhabditis briggsae] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504489.3 1 13-35
C14C11.3.2 1 13-35
C14C11.3.1 1 13-35
GENEFINDER00000024132 2 15-34,78-100
Sequence
Target Sequence 
>C. ELEGANS:185758_AT
ggaatcattgtcactggatggcagcgatatgatcatttagctggactttgtgagactctt
cccatcggaactgcttcaatgatgcttcaaatgcaaattgctctaaatgcaccagctcta
gatttagaaggaactagacaaaaagctgcaacactattagaatgtcaaggattcaatgtg
gatggagtgaaggttgtcagcaatcagtgtaaatatagaggattccaaacatatttgatc
taccagagcgaggttccgaatctgtttgctagaatcgacagtgaactgagtaaaaaccat
catttaatgggatgggctaatcgatacaataggaaatacaacatttctcaaaattggtac
catcgtgaaatgcttccatttgtacagcaacttgttggccaatacgatcgggttgaaagt
gatctcagagcttcgatgaaagatttgtactttgagaatacaatagatgaattcatttac
gagaatctcggggaaatgtcggagaaacttcacggttatttggaagaaattcagcgactt
gacaaacttcgagcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAATCATTGTCACTGGATGGCAGC 303 533 1177 Antisense
TGGACTTTGTGAGACTCTTCCCATC 594 547 1218 Antisense
ATCGGAACTGCTTCAATGATGCTTC 411 35 1240 Antisense
AAATTGCTCTAAATGCACCAGCTCT 636 115 1271 Antisense
TTGATCTACCAGAGCGAGGTTCCGA 536 545 1411 Antisense
GAGGTTCCGAATCTGTTTGCTAGAA 573 401 1426 Antisense
GGTACCATCGTGAAATGCTTCCATT 233 505 1532 Antisense
GCTTCCATTTGTACAGCAACTTGTT 267 307 1548 Antisense
GCAACTTGTTGGCCAATACGATCGG 566 317 1563 Antisense
GAAAGTGATCTCAGAGCTTCGATGA 380 361 1591 Antisense
CAGCGACTTGACAAACTTCGAGCAT 432 203 1708 Antisense
Sequence Source Affymetrix Proprietary Database