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[185757_at]

Description C15B12.3 /REP_DB=WormBase Gene ID /WP=CE02485 /TR=Q18004 /GB=AAK39161.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 74      4grp_total > 32      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 2.6
(-3)
A 		2.7
(-2.9)
A 		10.8
(3)
A 		3.6
(-2.3)
A 		8
B 2.6
(-1.1)
A 		1.6
(-3)
A 		4.7
(3)
A 		2.5
(-1.3)
A 		3
C 1.5
(-3)
A 		6.5
(-0.2)
A 		3.8
(-1.7)
A 		12.1
(3)
A 		11
avr 2.2
(-3) 		3.6
(-1) 		6.4
(3) 		6.1
(2.6) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 2.5
(-3)
A 		2.6
(-2.9)
A 		2.7
(-2.8)
A 		4.6
(-1)
A 		5.6
(-0.1)
A 		8.9
(3)
A 		6
B 1.6
(0)
A 		2.8
(3)
A 		1.6
(0)
A 		0.6
(-2.5)
A 		0.6
(-2.5)
A 		0.4
(-3)
A 		2
C 0.9
(-3)
A 		1.7
(-2)
A 		5.9
(3)
A 		4
(0.7)
A 		1.7
(-2)
A 		1.8
(-1.9)
A 		5
avr 1.7
(-3) 		2.4
(-0.9) 		3.4
(2.1) 		3.1
(1.2) 		2.6
(-0.3) 		3.7
(3) 		2
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 0.9
(-2)
A 		0.6
(-2.7)
A 		2.8
(3)
A 		0.5
(-3)
A 		2
B 0.8
(0.4)
A 		0.4
(-3)
A 		1.1
(3)
A 		0.5
(-2.1)
A 		1
C 0.5
(-3)
A 		1.9
(2.6)
A 		1.3
(0.2)
A 		2
(3)
A 		2
avr 0.7
(-3) 		1
(-1.2) 		1.7
(3) 		1
(-1.2) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 0.5
(-3)
A 		0.9
(-1.6)
A 		0.6
(-2.6)
A 		1.2
(-0.5)
A 		1.7
(1.2)
A 		2.2
(3)
A 		2
B 0.6
(0.8)
A 		0.9
(3)
A 		0.4
(-0.8)
A 		0.2
(-2.3)
A 		0.3
(-1.5)
A 		0.1
(-3)
A 		1
C 0.3
(-3)
A 		0.5
(-2)
A 		1.5
(3)
A 		0.8
(-0.5)
A 		0.6
(-1.5)
A 		0.6
(-1.5)
A 		1
avr 0.5
(-3) 		0.8
(0.6) 		0.8
(0.6) 		0.7
(-0.6) 		0.9
(1.8) 		1
(3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185757_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16382
Sequence Type Exemplar sequence
Representative Public ID C15B12.3 NCBI
Target Description C15B12.3 /REP_DB=WormBase Gene ID /WP=CE02485 /TR=Q18004 /GB=AAK39161.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076689(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076689 NCBI Caenorhabditis elegans C15B12.3 (C15B12.3) mRNA, complete cds. 11/11 None
SNAP00000029079 ENSEMBL cdna:SNAP chromosome:CEL140:X:6467239:6467484:-1 10/11 None
C15B12.3 ENSEMBL cdna:known chromosome:CEL140:X:6467239:6467517:-1 gene:C15B12.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6467238-6467517(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C15B12.3
Entrez Gene 182628 Entrez gene
SwissProt Q18004 EMBL-EBI
WormBase CE02485 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39161 Hypothetical protein C15B12.3 [Caenorhabditis elegans] ref|NP_509090.1| C15B12.3 [Caenorhabditis elegans] 1.0E-49
blast AAK39161 Hypothetical protein C15B12.3 [Caenorhabditis elegans] ref|NP_509090.1| C15B12.3 [Caenorhabditis elegans] 1.0E-42
Sequence
Target Sequence 
>C. ELEGANS:185757_AT
cgcgcgaccgccatggagtaatgggtaagaagttcgattcagaaaccgtcaaggtaagta
aagaggcaagttcaattctcaacagtggtacattgggaacatacgaggaatgtacgacgc
atcaacagtatccgcaagaacagcgagccacaatgtgcgatgaatgcgcgacgacctacg
agcgcaccaacattacattttgtttttctccgaggaatgtattatgcgaattgccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGCGCGACCGCCATGGAGTAATGGG 515 255 26 Antisense
AGTTCGATTCAGAAACCGTCAAGGT 131 65 56 Antisense
GGCAAGTTCAATTCTCAACAGTGGT 90 531 90 Antisense
GTACGACGCATCAACAGTATCCGCA 268 459 137 Antisense
GTATCCGCAAGAACAGCGAGCCACA 465 455 153 Antisense
GAACAGCGAGCCACAATGTGCGATG 541 349 163 Antisense
ATGTGCGATGAATGCGCGACGACCT 286 47 178 Antisense
AATGCGCGACGACCTACGAGCGCAC 701 165 188 Antisense
ACGAGCGCACCAACATTACATTTTG 467 93 203 Antisense
TACATTTTGTTTTTCTCCGAGGAAT 165 641 219 Antisense
GAGGAATGTATTATGCGAATTGCCG 63 405 237 Antisense
Sequence Source Affymetrix Proprietary Database