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[185756_at]

Description Y75B8A.25 /REP_DB=WormBase Gene ID /WP=CE23036 /TR=Q9XW62 /GB=CAA22109.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 47      4grp_total > 62      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 161
1 2 3 4 range
A 251
(3)
A 		119.5
(-3)
A 		241.6
(2.6)
A 		133
(-2.4)
A 		132
B 227.1
(3)
P 		190.5
(1.4)
A 		192.1
(1.5)
A 		89.9
(-3)
A 		137
C 200.1
(3)
A 		162.2
(0.3)
A 		190.5
(2.3)
A 		115.1
(-3)
A 		85
avr 226.1
(3) 		157.4
(-0.6) 		208.1
(2) 		112.7
(-3) 		113

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 177
1 2 3 4 5 6 range
A 245.1
(1.7)
A 		259.1
(2.6)
P 		176.3
(-3)
A 		207.3
(-0.9)
A 		264.7
(3)
P 		263.7
(2.9)
P 		88
B 302.1
(1.7)
A 		261.5
(0.3)
P 		236.4
(-0.6)
A 		247.6
(-0.2)
M 		164.5
(-3)
A 		341.7
(3)
P 		177
C 316.8
(3)
P 		281.5
(1.3)
P 		227.6
(-1.3)
P 		191.3
(-3)
A 		229.7
(-1.2)
A 		273.2
(0.9)
P 		126
avr 288
(2.6) 		267.4
(1.1) 		213.4
(-3) 		215.4
(-2.8) 		219.6
(-2.5) 		292.9
(3) 		80
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 91.4
(3)
A 		25.9
(-2.5)
A 		63.2
(0.6)
A 		19.5
(-3)
A 		72
B 72.4
(3)
P 		47
(0.1)
A 		44.5
(-0.1)
A 		19.2
(-3)
A 		53
C 66.2
(3)
A 		46.6
(0.5)
A 		66.4
(3)
A 		19.4
(-3)
A 		47
avr 76.7
(3) 		39.8
(-0.9) 		58
(1) 		19.4
(-3) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 89
1 2 3 4 5 6 range
A 45.2
(-2.2)
A 		92.1
(3)
P 		38.4
(-3)
A 		52.6
(-1.4)
A 		79.9
(1.6)
P 		64.2
(-0.1)
P 		54
B 105.1
(1.1)
A 		87
(-0.5)
P 		57.4
(-3)
A 		65.6
(-2.3)
M 		66.8
(-2.2)
A 		127.4
(3)
P 		70
C 117.4
(3)
P 		85.9
(0.6)
P 		57.9
(-1.5)
P 		38.5
(-3)
A 		74.3
(-0.3)
A 		91.5
(1)
P 		79
avr 89.2
(2.3) 		88.3
(2.2) 		51.2
(-3) 		52.2
(-2.9) 		73.7
(0.1) 		94.4
(3) 		43
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185756_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6996
Sequence Type Exemplar sequence
Representative Public ID Y75B8A.25 NCBI
Target Description Y75B8A.25 /REP_DB=WormBase Gene ID /WP=CE23036 /TR=Q9XW62 /GB=CAA22109.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067196(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067196 NCBI Caenorhabditis elegans Y75B8A.25 (Y75B8A.25) mRNA, complete cds. 11/11 None
SNAP00000020088 ENSEMBL cdna:SNAP chromosome:CEL140:III:12268590:12297259:1 11/11 None
GENEFINDER00000020164 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:12273917:12281909:1 11/11 None
Y75B8A.25 ENSEMBL cdna:known chromosome:CEL140:III:12273915:12282058:1 gene:Y75B8A.25 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12273912-12281905(+) 98.42 100.0
Public Domain and Genome References
Gene Title
Ensembl Y75B8A.25
Entrez Gene 176654 Entrez gene
SwissProt Q9XW62 EMBL-EBI
WormBase CE23036 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA22109 Hypothetical protein Y75B8A.25 [Caenorhabditis elegans] ref|NP_499597.1| Y75B8A.25 [Caenorhabditis elegans] 0.0
blast CAE74728 Hypothetical protein CBG22546 [Caenorhabditis briggsae] 0.0
blast CAA22109 Hypothetical protein Y75B8A.25 [Caenorhabditis elegans] ref|NP_499597.1| Y75B8A.25 [Caenorhabditis elegans] 1.0E-158
blast CAE74728 Hypothetical protein CBG22546 [Caenorhabditis briggsae] 1.0E-118
blast NP_500639 Y17G9B.1 [Caenorhabditis elegans] gb|AAF60443.2| Hypothetical protein Y17G9B.1 [Caenorhabditis elegans] 3.0E-73
Sequence
Target Sequence 
>C. ELEGANS:185756_AT
ggtagtgcacctgtattggagttgaagactgatgacgatgtcaattatgcagttttttgt
attgttgagaaatatatttcactggccgaactcgacgaggaactggctccaacaatttcc
gatctaatctctcggctctcggtagcccatcgacgtgtcgagaaagtattcattgtgctc
atgttcaacaaatcgacacttttacgacagaatcctgaagagtgtctgtcgaaatttatg
gagcacacgacggctgagaattcggatgcggtggcaattgagtggaatcaagaaaaggcg
cttgtcacgcttttctttacggttttcgccaaaaacgccacaatcgcttcaaaaggatac
aaaatggtgttgaacgacgatttgctgtggaaatatgtgaaaatgtccgtagatcacgtg
ctcgaaattccaaaagcgtcgtttattcttctgcaattgataacgacctgcaagccccgt
ctccacacagattatgcgcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTAGTGCACCTGTATTGGAGTTGA 468 503 1102 Antisense
GAACTCGACGAGGAACTGGCTCCAA 236 349 1189 Antisense
TGGCTCCAACAATTTCCGATCTAAT 609 543 1205 Antisense
ATTTCCGATCTAATCTCTCGGCTCT 498 17 1216 Antisense
CGGTAGCCCATCGACGTGTCGAGAA 649 243 1241 Antisense
GTATTCATTGTGCTCATGTTCAACA 367 453 1267 Antisense
GGAGCACACGACGGCTGAGAATTCG 31 521 1341 Antisense
GAAAAGGCGCTTGTCACGCTTTTCT 556 347 1393 Antisense
AATGTCCGTAGATCACGTGCTCGAA 120 163 1503 Antisense
AAGCGTCGTTTATTCTTCTGCAATT 681 149 1535 Antisense
CCGTCTCCACACAGATTATGCGCGA 475 265 1578 Antisense
Sequence Source Affymetrix Proprietary Database