[Home] | [Total List]

[185754_at]

Description C14F11.2 /REP_DB=WormBase Gene ID /WP=CE03985 /TR=Q17989 /GB=AAA80365.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 20      6grp_high1_10_10 > 24      4grp_highest_8_8 > 49      4grp_high_8_8 > 41      6grp_highest_nonorm > 51      6grp_total > 02      4grp_total > 54      6grp_highest_sub > De      6grp_high1_sub > 02      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 473
1 2 3 4 range
A 608.6
(3)
P 		493.2
(0.8)
P 		361.9
(-1.7)
P 		291.5
(-3)
P 		317
B 738.4
(3)
P 		451
(-1)
P 		392.7
(-1.8)
P 		303.6
(-3)
P 		435
C 648.7
(3)
P 		433
(-0.4)
P 		356.1
(-1.6)
P 		265.8
(-3)
P 		383
avr 665.2
(3) 		459.1
(-0.3) 		370.2
(-1.7) 		287
(-3) 		378

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 408
1 2 3 4 5 6 range
A 634.1
(2.3)
P 		663.1
(3)
P 		464.8
(-1.9)
P 		582.1
(1)
P 		560.5
(0.5)
P 		420.9
(-3)
P 		242
B 789.4
(3)
P 		760.8
(2.6)
P 		665.1
(1.2)
P 		536.3
(-0.7)
P 		640.1
(0.8)
P 		381.8
(-3)
P 		408
C 547.8
(-0.9)
P 		789.2
(3)
P 		566.3
(-0.6)
P 		484.8
(-1.9)
P 		536.7
(-1.1)
P 		417.8
(-3)
P 		371
avr 657.1
(1.5) 		737.7
(3) 		565.4
(-0.1) 		534.4
(-0.7) 		579.1
(0.1) 		406.8
(-3) 		331
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 193
1 2 3 4 range
A 221.6
(3)
P 		107.1
(-0.8)
P 		94.6
(-1.3)
P 		42.7
(-3)
P 		179
B 235.5
(3)
P 		111.4
(-1.4)
P 		91
(-2.1)
P 		64.7
(-3)
P 		171
C 214.7
(3)
P 		124.5
(-0.2)
P 		124.1
(-0.2)
P 		44.8
(-3)
P 		170
avr 223.9
(3) 		114.3
(-0.8) 		103.2
(-1.2) 		50.7
(-3) 		173

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 177
1 2 3 4 5 6 range
A 116.9
(-2.3)
P 		235.8
(3)
P 		101.2
(-3)
P 		147.6
(-0.9)
P 		169.1
(0)
P 		102.5
(-2.9)
P 		135
B 274.7
(3)
P 		253.2
(2)
P 		161.5
(-2.1)
P 		142
(-3)
P 		260.1
(2.3)
P 		142.4
(-3)
P 		133
C 203
(1.4)
P 		240.8
(3)
P 		144.1
(-1)
P 		97.5
(-3)
P 		173.7
(0.2)
P 		139.8
(-1.2)
P 		143
avr 198.2
(0.6) 		243.3
(3) 		135.6
(-2.6) 		129
(-3) 		201
(0.8) 		128.2
(-3) 		115
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185754_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16301
Sequence Type Exemplar sequence
Representative Public ID C14F11.2 NCBI
Target Description C14F11.2 /REP_DB=WormBase Gene ID /WP=CE03985 /TR=Q17989 /GB=AAA80365.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076641(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076641 NCBI Caenorhabditis elegans C14F11.2 (C14F11.2) mRNA, complete cds. 11/11 None
GENEFINDER00000008184 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:6207268:6213866:-1 9/11 None
SNAP00000008168 ENSEMBL cdna:SNAP chromosome:CEL140:X:6208763:6213866:-1 11/11 None
C14F11.2 ENSEMBL cdna:known chromosome:CEL140:X:6208724:6213869:-1 gene:C14F11.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6208762-6213806(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C14F11.2
Entrez Gene 180893 Entrez gene
SwissProt Q17989 EMBL-EBI
WormBase CE29578 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.27919.1.S1_S_AT similar to leucine-rich repeats and calponin homology (CH) domain containing 2 cfa
CANINE_2:CFAAFFX.27925.1.S1_S_AT similar to leucine-rich repeats and calponin homology (CH) domain containing 2 cfa
DROSGENOME1:146401_AT dm
DROSOPHILA_2:1627326_A_AT dm
HU35KSUBC:RC_Z40300_AT leucine-rich repeats and calponin homology (CH) domain containing 2 hs
U133_X3P:HS.65366.0.S1_3P_AT leucine-rich repeats and calponin homology (CH) domain containing 2 hs
HG-U133_PLUS_2:227688_AT leucine-rich repeats and calponin homology (CH) domain containing 2 hs
HG-U133B:227688_AT leucine-rich repeats and calponin homology (CH) domain containing 2 hs
HG-U95C:62523_AT leucine-rich repeats and calponin homology (CH) domain containing 2 hs
Protein Similarities
Method ID Description E-Value
blast AAA80365 Hypothetical protein C14F11.2 [Caenorhabditis elegans] ref|NP_509042.1| C14F11.2 [Caenorhabditis elegans] 0.0
blast CAE61212 Hypothetical protein CBG05005 [Caenorhabditis briggsae] 0.0
blast AAK68176 Hypothetical protein C14F11.7 [Caenorhabditis elegans] ref|NP_509041.1| C14F11.7 [Caenorhabditis elegans] 2.0E-38
blast AAF53603 CG6860-PB, isoform B [Drosophila melanogaster] ref|NP_609834.2| CG6860-PB, isoform B [Drosophila melanogaster] 9.0E-31
Protein Domains
Database ID Description E-Value
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.0034
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.72
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.23
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.0017
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 1.8E-4
Pfam IPR001715 EMBL-EBI Calponin-like actin-binding 1.5E-6
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.0034
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.72
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.23
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.0017
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 1.8E-4
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.0034
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.72
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.23
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.0017
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 1.8E-4
Pfam IPR001715 EMBL-EBI Calponin-like actin-binding 1.5E-6
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000008184 1 820-842
Sequence
Target Sequence 
>C. ELEGANS:185754_AT
cagcagcttgtcgagtcctggaatgggtaaaaagcccatttccaaagtggcacctatgcc
aaaaccaacaccccgcccaattgctacaaatgggaacgttcaaactaaaattggaactgt
tcgtcgccccaatccgatacagagtacaactgtcacaagatccacaaacactgcaactgt
caaaaaggaaatccccgtgaaaactaccaaaattgcatccgcaatttctcgtagatcaga
agagccagctgctcaaaaaattgcaagcaaaccgatcacttcaagtgtgacaaacctgaa
taagtcaggacttcgcgctcctgcaactggtatagcgaatgacgtggagagtgcaagaaa
gttgatgagagaaaaactgggaccaacgttttccctgaataagggtgacattagtttcag
cttgcagttgtcagacgggcaagaactttgcaaattcataaataaacttcatccggaatc
aatctctcttgcgtcttcaacagattcgaccacattgtgctctcagatggacataatctc
aaaaagaaaccctcaaaaagtagctcgcacagttctcacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGCAGCTTGTCGAGTCCTGGAATG 61 205 1227 Antisense
AAGCCCATTTCCAAAGTGGCACCTA 264 149 1258 Antisense
GATCCACAAACACTGCAACTGTCAA 472 415 1385 Antisense
TTGCATCCGCAATTTCTCGTAGATC 689 703 1439 Antisense
GAATAAGTCAGGACTTCGCGCTCCT 229 325 1524 Antisense
TCGCGCTCCTGCAACTGGTATAGCG 314 597 1539 Antisense
GTTTCAGCTTGCAGTTGTCAGACGG 18 451 1640 Antisense
CTTCATCCGGAATCAATCTCTCTTG 649 219 1693 Antisense
TCTCTCTTGCGTCTTCAACAGATTC 673 611 1709 Antisense
GATTCGACCACATTGTGCTCTCAGA 184 433 1729 Antisense
AAAAGTAGCTCGCACAGTTCTCACC 354 131 1782 Antisense
Sequence Source Affymetrix Proprietary Database