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[185751_at]

Description C02A12.5 /REP_DB=WormBase Gene ID /WP=CE07829 /TR=O16203 /GB=AAB65268.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 21      4grp_total > 27      6grp_cgc > 61      6grp_cgc_sub > De      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 223
1 2 3 4 range
A 98.2
(-0.9)
A 		79.5
(-1.9)
A 		57.9
(-3)
A 		174.7
(3)
A 		117
B 73
(-1.3)
A 		192
(3)
A 		25.3
(-3)
A 		97.1
(-0.4)
A 		167
C 103.7
(-2.2)
A 		126.9
(-1.3)
A 		80.3
(-3)
A 		248.2
(3)
M 		168
avr 91.6
(-1.1) 		132.8
(1) 		54.5
(-3) 		173.3
(3) 		119

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 85
1 2 3 4 5 6 range
A 58.1
(0.7)
A 		72.9
(3)
A 		56.9
(0.5)
A 		38.2
(-2.4)
A 		55.7
(0.3)
A 		34.2
(-3)
A 		39
B 68.1
(3)
A 		11
(-3)
A 		40.3
(0.1)
A 		53.7
(1.5)
A 		46.4
(0.7)
A 		13.3
(-2.8)
A 		57
C 22.3
(-3)
A 		95.5
(3)
A 		81.6
(1.9)
A 		47.8
(-0.9)
A 		37.2
(-1.8)
A 		29.2
(-2.4)
A 		73
avr 49.5
(1.2) 		59.8
(3) 		59.6
(3) 		46.6
(0.7) 		46.4
(0.6) 		25.6
(-3) 		34
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 35.7
(3)
A 		17.3
(-2.4)
A 		15.1
(-3)
A 		25.6
(0.1)
A 		21
B 23.3
(-0.5)
A 		47.4
(3)
A 		5.9
(-3)
A 		20.7
(-0.9)
A 		42
C 34.3
(-0.3)
A 		36.5
(0.7)
A 		28
(-3)
A 		41.8
(3)
M 		14
avr 31.1
(2.1) 		33.7
(3) 		16.3
(-3) 		29.4
(1.5) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 10.7
(-2.2)
A 		25.9
(3)
A 		12.4
(-1.6)
A 		9.7
(-2.5)
A 		16.8
(-0.1)
A 		8.3
(-3)
A 		18
B 23.7
(3)
A 		3.6
(-3)
A 		9.8
(-1.1)
A 		14.2
(0.2)
A 		18.9
(1.6)
A 		5
(-2.6)
A 		20
C 8.3
(-3)
A 		29.1
(3)
A 		20.8
(0.6)
A 		9.6
(-2.6)
A 		12.1
(-1.9)
A 		9.8
(-2.6)
A 		21
avr 14.2
(0.3) 		19.5
(3) 		14.3
(0.4) 		11.2
(-1.2) 		15.9
(1.2) 		7.7
(-3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185751_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15412
Sequence Type Exemplar sequence
Representative Public ID C02A12.5 NCBI
Target Description C02A12.5 /REP_DB=WormBase Gene ID /WP=CE07829 /TR=O16203 /GB=AAB65268.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026186(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026186 NCBI Caenorhabditis elegans Serpentine Receptor, class BC (class B-like) family member (srbc-33) (srbc-33) mRNA, complete cds. 11/11 None
C02A12.10 ENSEMBL cdna:known chromosome:CEL140:V:3482917:3484566:-1 gene:C02A12.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3482916-3486768(-) 92.66 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srbc-33
Ensembl C02A12.10
Entrez Gene 3565603 Entrez gene
SwissProt Q5F4V2 EMBL-EBI
WormBase CE38022 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAW88412 Serpentine receptor, class bc (class b-like) protein 33 [Caenorhabditis elegans] ref|NP_001021357.1| Serpentine Receptor, class BC (class B-like) family member (srbc-33) [Caenorhabditis elegans] 1.0E-148
blast T03858 hypothetical protein C02A12.5 - Caenorhabditis elegans 1.0E-114
blast AAW88416 Serpentine receptor, class bc (class b-like) protein 36 [Caenorhabditis elegans] ref|NP_001021358.1| Serpentine Receptor, class BC (class B-like) family member (srbc-36) [Caenorhabditis elegans] 4.0E-84
Protein Domains
Database ID Description E-Value
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 3.4E-121
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001021357.1 7 4-23,44-66,81-103,124-143,179-198,219-238,253-272
C02A12.10 7 4-23,44-66,81-103,124-143,179-198,219-238,253-272
Sequence
Target Sequence 
>C. ELEGANS:185751_AT
tcacattttgcagcctgccgatctgcaatcgccctatcaatatcattcgaaaggttcatt
gccgcatattttccaattttgtaccgtacaaccaggagcaaaatcccaaactggcttatt
ttcctgctcgccatatctttcgggttttccgaggagatatggctctttaagttttgcgac
tacaaactggatatcccatcaaactgtaaagtatttggatgcgcggtgaactcttgtttc
tacagcttttggacaattcataaaagtataatatttttctcgatcctggtgttttctata
ctgatatctataaaactatttatctggaatactaatgggcaatctagcaatcaaatttcc
aaagccaataggctagctttattagacacctttgtggttctactatttgattttcttcca
tcattttgcgggactatgtggcctactgcaccagttttttcatttgatgtcgtcggtccc
tacaactcagtactgaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCACATTTTGCAGCCTGCCGATCTG 8 627 1051 Antisense
GCAATCGCCCTATCAATATCATTCG 28 323 1075 Antisense
GGTTCATTGCCGCATATTTTCCAAT 640 505 1103 Antisense
AATCCCAAACTGGCTTATTTTCCTG 490 165 1152 Antisense
TCGCCATATCTTTCGGGTTTTCCGA 492 599 1178 Antisense
CGCGGTGAACTCTTGTTTCTACAGC 209 255 1272 Antisense
ATTTTTCTCGATCCTGGTGTTTTCT 536 13 1323 Antisense
TTTTGCGGGACTATGTGGCCTACTG 452 675 1474 Antisense
TGGCCTACTGCACCAGTTTTTTCAT 334 545 1489 Antisense
TTTCATTTGATGTCGTCGGTCCCTA 392 671 1508 Antisense
GGTCCCTACAACTCAGTACTGAAAA 438 441 1525 Antisense
Sequence Source Affymetrix Proprietary Database