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[185750_at]

Description F59E11.2 /REP_DB=WormBase Gene ID /WP=CE11498 /TR=O16764 /GB=AAG24139.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 23      4grp_high_8_8 > 16      6grp_total > 22      4grp_total > 46      6grp_high1_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 81
1 2 3 4 range
A 128.1
(3)
P 		87.9
(0)
A 		68.5
(-1.4)
A 		47.3
(-3)
A 		81
B 110.6
(3)
P 		72
(-0.9)
P 		57
(-2.5)
A 		51.6
(-3)
A 		59
C 109
(3)
P 		79.2
(-1.7)
P 		70.8
(-3)
P 		88.6
(-0.2)
P 		38
avr 115.9
(3) 		79.7
(-1.1) 		65.4
(-2.7) 		62.5
(-3) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 142
1 2 3 4 5 6 range
A 184.8
(2.6)
P 		193.3
(3)
P 		163.5
(1.6)
P 		133.5
(0.2)
P 		77.5
(-2.4)
P 		65.2
(-3)
A 		128
B 158.9
(0.9)
P 		203.6
(3)
P 		151
(0.6)
P 		130
(-0.4)
P 		116.4
(-1)
P 		74.1
(-3)
P 		130
C 112.3
(-0.8)
P 		199.6
(3)
P 		158.8
(1.2)
P 		129.4
(-0.1)
P 		62.1
(-3)
P 		103.5
(-1.2)
P 		138
avr 152
(0.6) 		198.8
(3) 		157.8
(0.9) 		131
(-0.5) 		85.3
(-2.8) 		80.9
(-3) 		118
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 46.7
(3)
P 		19.1
(-1.2)
A 		17.9
(-1.3)
A 		6.9
(-3)
A 		40
B 35.3
(3)
P 		17.8
(-1.3)
P 		13.2
(-2.5)
A 		11
(-3)
A 		24
C 36.1
(3)
P 		22.8
(-0.8)
P 		24.7
(-0.2)
P 		14.9
(-3)
P 		21
avr 39.4
(3) 		19.9
(-1.1) 		18.6
(-1.4) 		10.9
(-3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 34.1
(-0.9)
P 		68.8
(3)
P 		35.6
(-0.8)
P 		33.8
(-1)
P 		23.4
(-2.1)
P 		15.9
(-3)
A 		53
B 55.3
(1.1)
P 		67.8
(3)
P 		36.7
(-1.6)
P 		34.4
(-2)
P 		47.3
(-0.1)
P 		27.6
(-3)
P 		40
C 41.6
(0.2)
P 		60.9
(3)
P 		40.4
(-0)
P 		26
(-2.1)
P 		20.1
(-3)
P 		34.7
(-0.9)
P 		41
avr 43.7
(-0.3) 		65.8
(3) 		37.6
(-1.3) 		31.4
(-2.2) 		30.3
(-2.4) 		26.1
(-3) 		40
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185750_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11840
Sequence Type Exemplar sequence
Representative Public ID F59E11.2 NCBI
Target Description F59E11.2 /REP_DB=WormBase Gene ID /WP=CE11498 /TR=O16764 /GB=AAG24139.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072926(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072926 NCBI Caenorhabditis elegans F59E11.2 (F59E11.2) mRNA, complete cds. 10/11 None
F59E11.2 ENSEMBL cdna:known chromosome:CEL140:V:9004136:9005681:1 gene:F59E11.2 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000020048 8/11 Cross Hyb Matching Probes None
GENEFINDER00000020057 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9004136-9005682(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F59E11.2
Entrez Gene 186621 Entrez gene
SwissProt O16764 EMBL-EBI
WormBase CE35889 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAG24139 Hypothetical protein F59E11.2 [Caenorhabditis elegans] ref|NP_505327.2| F59E11.2 [Caenorhabditis elegans] 0.0
blast CAE72066 Hypothetical protein CBG19152 [Caenorhabditis briggsae] 1.0E-147
blast AAF60486 Dehydrogenases, short chain protein 9 [Caenorhabditis elegans] ref|NP_498146.1| Y32H12A.3 [Caenorhabditis elegans] 2.0E-95
Protein Domains
Database ID Description E-Value
Pfam IPR002198 EMBL-EBI Short-chain dehydrogenase/reductase SDR 4.7E-28
Sequence
Target Sequence 
>C. ELEGANS:185750_AT
tcgatcaggatccttctttctgggatgatatcaatggtgttggactgagaaaccattact
actgctcagtgtacgctgccaggatgatggttgaacgacgtaagggattgattgtaaacg
ttggatcattaggtggattaaaatatgttttcaacgttgcatatggagctggaaaagaag
cgctagccagaatgtcaacggatatggcagtggagctgaatccttacaatgtctgtgtgg
taactttaataccagggcctgtaaagacagaaactgcaaatagaacaatcattgatgatg
cgtataaaatgattaaagaaaatccggaactcgaagaattcataaaaggagaatccactg
aatacaccggaaaagcacttgctcgtctggcaatggatcccgggaaactcaaaaaatctg
gaaagacactatttactgaagacctagcacaaaagtacgacttttcggataaacatggtg
ctggtatggaaccgcaaaacattcggagtatccggacgattctcgggacaatgggaaaag
aagaagtggcaaaatacatcccaccacaaatcaagctaccaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGATCAGGATCCTTCTTTCTGGGA 428 603 368 Antisense
GAAACCATTACTACTGCTCAGTGTA 383 359 416 Antisense
TGCTCAGTGTACGCTGCCAGGATGA 136 581 430 Antisense
GAAGCGCTAGCCAGAATGTCAACGG 345 343 544 Antisense
GGAGCTGAATCCTTACAATGTCTGT 289 521 579 Antisense
GGAGAATCCACTGAATACACCGGAA 408 517 715 Antisense
GAAAAGCACTTGCTCGTCTGGCAAT 646 353 737 Antisense
GTCTGGCAATGGATCCCGGGAAACT 128 469 752 Antisense
ACATGGTGCTGGTATGGAACCGCAA 302 107 840 Antisense
GGAGTATCCGGACGATTCTCGGGAC 564 517 872 Antisense
TCCCACCACAAATCAAGCTACCAAA 581 597 926 Antisense
Sequence Source Affymetrix Proprietary Database