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[185748_at]

Description F07C4.11 /REP_DB=WormBase Gene ID /WP=CE09210 /TR=P91216 /GB=AAG24042.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 08      4grp_total > 48      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 129
1 2 3 4 range
A 4
(-3)
A 		85.1
(2.5)
P 		92.4
(3)
P 		5.3
(-2.9)
A 		88
B 25
(-2.1)
A 		49.6
(-0.9)
A 		133.4
(3)
A 		5.8
(-3)
A 		128
C 4.4
(-3)
A 		57.9
(1)
A 		84.5
(3)
M 		45.6
(0.1)
A 		80
avr 11.1
(-3) 		64.2
(0.5) 		103.4
(3) 		18.9
(-2.5) 		92

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 29.1
(2.6)
A 		6.2
(-2.3)
A 		31
(3)
A 		3
(-3)
A 		2.8
(-3)
A 		13.6
(-0.7)
A 		28
B 57.1
(3)
A 		6.3
(-2.6)
A 		2.9
(-3)
A 		2.6
(-3)
A 		4
(-2.8)
A 		3.8
(-2.9)
A 		55
C 46.2
(3)
A 		12.3
(-1.9)
A 		5.2
(-3)
A 		29.3
(0.5)
A 		13.4
(-1.8)
A 		5.1
(-3)
A 		41
avr 44.1
(3) 		8.3
(-2.7) 		13
(-2) 		11.6
(-2.2) 		6.7
(-3) 		7.5
(-2.9) 		37
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 1.5
(-2.8)
A 		18.5
(1.5)
P 		24.2
(3)
P 		0.8
(-3)
A 		23
B 8
(-1.6)
A 		12.2
(-0.8)
A 		30.9
(3)
A 		1.2
(-3)
A 		30
C 1.5
(-3)
A 		16.7
(0.3)
A 		29.4
(3)
M 		7.7
(-1.7)
A 		28
avr 3.7
(-2.9) 		15.8
(0) 		28.2
(3) 		3.2
(-3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 5.4
(1.6)
A 		2.2
(-1.6)
A 		6.8
(3)
A 		0.8
(-3)
A 		0.8
(-3)
A 		3.3
(-0.5)
A 		6
B 19.9
(3)
A 		2.1
(-2.6)
A 		0.7
(-3)
A 		0.7
(-3)
A 		1.6
(-2.7)
A 		1.4
(-2.8)
A 		19
C 17.1
(3)
A 		3.7
(-2.1)
A 		1.3
(-3)
A 		5.9
(-1.3)
A 		4.3
(-1.9)
A 		1.7
(-2.8)
A 		16
avr 14.1
(3) 		2.7
(-2.7) 		2.9
(-2.6) 		2.5
(-2.8) 		2.2
(-3) 		2.1
(-3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185748_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11841
Sequence Type Exemplar sequence
Representative Public ID F07C4.11 NCBI
Target Description F07C4.11 /REP_DB=WormBase Gene ID /WP=CE09210 /TR=P91216 /GB=AAG24042.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072578(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072578 NCBI Caenorhabditis elegans F07C4.11 (F07C4.11) mRNA, complete cds. 11/11 None
SNAP00000003396 ENSEMBL cdna:SNAP chromosome:CEL140:V:7645150:7645991:-1 11/11 None
GENEFINDER00000003400 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7645150:7645991:-1 11/11 None
F07C4.11 ENSEMBL cdna:known chromosome:CEL140:V:7645150:7645443:-1 gene:F07C4.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7645150-7645444(-) 85.03 100.0
Public Domain and Genome References
Gene Title
Ensembl F07C4.11
Entrez Gene 184134 Entrez gene
SwissProt P91216 EMBL-EBI
WormBase CE09210 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504978 F07C4.10 [Caenorhabditis elegans] gb|AAG24041.1| Hypothetical protein F07C4.10 [Caenorhabditis elegans] 1.0E-102
blast AAC69053 Hypothetical protein T05B4.10 [Caenorhabditis elegans] ref|NP_504147.1| T05B4.10 [Caenorhabditis elegans] 2.0E-77
blast AAC69054 Hypothetical protein T05B4.3 [Caenorhabditis elegans] ref|NP_504152.1| T05B4.3 [Caenorhabditis elegans] 1.0E-76
blast NP_504979 F07C4.11 [Caenorhabditis elegans] gb|AAG24042.1| Hypothetical protein F07C4.11 [Caenorhabditis elegans] 1.0E-40
blast NP_504978 F07C4.10 [Caenorhabditis elegans] gb|AAG24041.1| Hypothetical protein F07C4.10 [Caenorhabditis elegans] 1.0E-36
Protein Domains
Database ID Description E-Value
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 1.5E-14
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 2.8E-10
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 1.0E-10
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 1.5E-14
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 2.8E-10
Sequence
Target Sequence 
>C. ELEGANS:185748_AT
atgggaggatgcgtggatgccatcatggattgtgcgaatgacgtctcaatttgcaatgta
gtcggaatgcaagactttgtcaatcagtattgccagaaaacctgcgcaagatgcccatct
acaactgctgcttcggctcttgctgctgctgttgctgcttcttcatgtacgacatatgct
gccgattcgagtccttcgtgtgccgcctgggcgaagaatggattctgcacaaacatgtct
tacacattg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGGAGGATGCGTGGATGCCATCA 541 49 13 Antisense
GGATGCGTGGATGCCATCATGGATT 621 513 19 Antisense
GATGCCATCATGGATTGTGCGAATG 327 415 28 Antisense
ATCATGGATTGTGCGAATGACGTCT 500 29 34 Antisense
TGTTGCTGCTTCTTCATGTACGACA 522 563 162 Antisense
CATGTACGACATATGCTGCCGATTC 85 211 176 Antisense
GTACGACATATGCTGCCGATTCGAG 297 457 179 Antisense
ACATATGCTGCCGATTCGAGTCCTT 367 105 184 Antisense
GAATGGATTCTGCACAAACATGTCT 322 333 228 Antisense
GATTCTGCACAAACATGTCTTACAC 185 433 233 Antisense
CTGCACAAACATGTCTTACACATTG 589 237 237 Antisense
Sequence Source Affymetrix Proprietary Database